Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07900 190 / 2e-56 Mitochondrial transcription termination factor family protein (.1) AT1G21150 162 / 7e-46 Mitochondrial transcription termination factor family protein (.1) AT5G64950 124 / 8e-32 Mitochondrial transcription termination factor family protein (.1) AT1G61980 106 / 3e-25 Mitochondrial transcription termination factor family protein (.1) AT1G61970 103 / 2e-24 Mitochondrial transcription termination factor family protein (.1.2) AT1G62085 100 / 8e-23 Mitochondrial transcription termination factor family protein (.1) AT1G62120 98 / 3e-22 Mitochondrial transcription termination factor family protein (.1) AT1G61990 97 / 4e-22 Mitochondrial transcription termination factor family protein (.1) AT5G23930 96 / 1e-21 Mitochondrial transcription termination factor family protein (.1) AT3G46950 96 / 1e-21 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G034700 [exp] 405 / 1e-140 AT5G07900 202 / 2e-61 Mitochondrial transcription termination factor family protein (.1) Potri.004G222000 [exp] 391 / 2e-135 AT5G07900 200 / 1e-60 Mitochondrial transcription termination factor family protein (.1) Potri.003G190300 [exp] 388 / 5e-134 AT5G07900 209 / 8e-64 Mitochondrial transcription termination factor family protein (.1) Potri.001G034933 [exp] 379 / 2e-130 AT5G07900 194 / 3e-58 Mitochondrial transcription termination factor family protein (.1) Potri.003G190400 [exp] 375 / 9e-129 AT5G07900 206 / 9e-63 Mitochondrial transcription termination factor family protein (.1) Potri.001G035000 [exp] 373 / 9e-128 AT5G07900 209 / 7e-64 Mitochondrial transcription termination factor family protein (.1) Potri.001G034600 [exp] 371 / 3e-127 AT5G07900 197 / 4e-59 Mitochondrial transcription termination factor family protein (.1) Potri.003G190700 [exp] 369 / 8e-127 AT5G07900 213 / 3e-65 Mitochondrial transcription termination factor family protein (.1) Potri.001G034500 [exp] 359 / 1e-122 AT5G07900 208 / 2e-63 Mitochondrial transcription termination factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008688 [exp] 323 / 3e-108 AT5G07900 197 / 2e-59 Mitochondrial transcription termination factor family protein (.1) Lus10004957 [exp] 168 / 2e-48 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10036450 [exp] 166 / 2e-47 AT5G07900 176 / 3e-51 Mitochondrial transcription termination factor family protein (.1) Lus10040820 [exp] 165 / 7e-47 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 162 / 4e-46 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10002883 [exp] 162 / 8e-46 AT5G07900 196 / 9e-59 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 158 / 2e-44 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10041122 [exp] 150 / 1e-41 AT5G07900 166 / 2e-47 Mitochondrial transcription termination factor family protein (.1) Lus10028912 [exp] 144 / 3e-39 AT5G64950 249 / 1e-79 Mitochondrial transcription termination factor family protein (.1) Lus10004329 [exp] 142 / 1e-38 AT5G64950 238 / 2e-75 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [poplar] [flax] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Potri.001G030300.1 pacid=42790676 polypeptide=Potri.001G030300.1.p locus=Potri.001G030300 ID=Potri.001G030300.1.v4.1 annot-version=v4.1 ATGGCCGCTAGAAAGAAAAACCTGCAGCTGCTGCTTTCTCTTATACAAAAACGATGTCTCCAAACATCATCTGCTGATGCTCTACTTCCACCCACCAGGA CCACCACCAACACCAATGCTTCATCTTCATCATCATTTGATGTTCATTTCCTCATGAATTCATGTGGGCTTTCCTCAAAATCTGCCCTTTCAGTTTCCCA CAAGCTCCACCTCCAACAAAATAAGCTCCAAAAACCACAATCTGTGCTCCTCTTCTTGAAATCTCACGGATTTGACGATTCCCACATCGCCCAATTAATT GAAAAGCGACCCAAAATCCTCCATAGCGGAGTAGACGACACTTTGAAGCCCAAATTCGACTTCTTCGTTAAAAATGGTTTCACGGGTAAGCTTCTGCCTC AGCTTATCGCCTCCGATCCGAATATTTTGTCAGCGGCTGTAGATTCTCATCTTAAACCATGTTTTGAGCTTCTCAAGTTATTTCTGGGCAGTCCTGACAG AATTGTAGTTGCCTTAAAGCGTGCGCCTTTTTTAATGTCTTTTAGTTTCAAGGGTGCTGTGCAGCCAAATATTGAGTTGTTGATAAAAGAGGGAATGCAT GTTGATAGGGTTGCAAAACTACTAAGTTTGCATGCAAGAGTGATACTGGTTAAGCATGATAGGATGGTTTATGCAGTGAATGCTTTGAAGAATTTGGGTG TTGAACCCAAGACTCCTGTGTTTCTACATGCTGCTAAGGTAATGTTATCCATAAGTAAGTCGAATTGGAGGAAGAAAATTGAGGTTATGAAGAGCCTTGG ATGGAGTGAAGAGGAGATTATTGTGGCTTTTAAACGATACCCTTATCTATTAGCATGCTCAGAGGAGAAAATCAGAAAATCGTTGGATTTCTTTGTGAAT ACTTTAAAGTTAGAACCACAAGCTATAATTACATGTCCCGAGTATTTGTCATATTCGGTTGATAGAAGGCTTCGTCCCAGGCATAATGTTTTGAAGGTTT TGGTGTCAAAGAAGCTGGTTAAAGAAGATGAGAAGATTGTGCGGGCAGTAACCCGCATTAGTGATAGAGATTTCCTTGAAAAGTATGTTACTAAATATGC AGACAAGGTGACAGGTTTATTGGAAATATATGGTGGTATCAGCAAGGCAAAAAAGATGGAATCTTGA
AA sequence Show only first row Show all	>Potri.001G030300.1 pacid=42790676 polypeptide=Potri.001G030300.1.p locus=Potri.001G030300 ID=Potri.001G030300.1.v4.1 annot-version=v4.1 MAARKKNLQLLLSLIQKRCLQTSSADALLPPTRTTTNTNASSSSSFDVHFLMNSCGLSSKSALSVSHKLHLQQNKLQKPQSVLLFLKSHGFDDSHIAQLI EKRPKILHSGVDDTLKPKFDFFVKNGFTGKLLPQLIASDPNILSAAVDSHLKPCFELLKLFLGSPDRIVVALKRAPFLMSFSFKGAVQPNIELLIKEGMH VDRVAKLLSLHARVILVKHDRMVYAVNALKNLGVEPKTPVFLHAAKVMLSISKSNWRKKIEVMKSLGWSEEEIIVAFKRYPYLLACSEEKIRKSLDFFVN TLKLEPQAIITCPEYLSYSVDRRLRPRHNVLKVLVSKKLVKEDEKIVRAVTRISDRDFLEKYVTKYADKVTGLLEIYGGISKAKKMES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07900			Mitochondrial transcription te...		Potri.001G030300 [exp]	0	1
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Potri.019G121400 [exp]	9.38	0.7036
AT3G58660			Ribosomal protein L1p/L10e fam...		Potri.012G145000 [exp]	24.00	0.6824
AT4G38150			Pentatricopeptide repeat (PPR)...		Potri.004G209500 [exp]	32.24	0.6792
AT4G25210	GeBP		DNA-binding storekeeper protei...		Potri.009G088400 [exp]	36.87	0.6774
AT4G18905			Transducin/WD40 repeat-like su...		Potri.007G019601 [exp]	47.01	0.6179
AT5G44170			S-adenosyl-L-methionine-depend...		Potri.017G017000 [exp]	47.90	0.5989
AT3G17460			PHD finger family protein (.1)		Potri.008G206600 [exp]	48.74	0.6681
AT2G34400			Pentatricopeptide repeat (PPR-...		Potri.018G147873 [exp]	59.97	0.6211
AT3G02490			Pentatricopeptide repeat (PPR)...		Potri.004G108000 [exp]	64.53	0.6421
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Potri.015G108900 [exp]	73.83	0.6019

Compare expression of checked genes

Potri.001G030300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.