Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22590 538 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT5G49690 442 / 1e-152 UDP-Glycosyltransferase superfamily protein (.1) AT5G65550 408 / 3e-139 UDP-Glycosyltransferase superfamily protein (.1) AT3G29630 206 / 5e-61 UDP-Glycosyltransferase superfamily protein (.1) AT5G54010 206 / 5e-61 UDP-Glycosyltransferase superfamily protein (.1) AT1G64910 198 / 4e-58 UDP-Glycosyltransferase superfamily protein (.1) AT5G54060 198 / 6e-58 UF3GT UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) AT5G53990 192 / 1e-55 UDP-Glycosyltransferase superfamily protein (.1) AT2G22930 190 / 3e-55 UDP-Glycosyltransferase superfamily protein (.1) AT1G64920 186 / 2e-53 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G034100 [exp] 578 / 0 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182575 [exp] 508 / 3e-178 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G184400 [exp] 440 / 2e-151 AT5G49690 549 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G088400 [exp] 400 / 3e-135 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G162300 [exp] 389 / 1e-131 AT2G22590 372 / 6e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 373 / 2e-125 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182650 [exp] 272 / 5e-89 AT5G65550 254 / 4e-82 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G179700 [exp] 231 / 1e-70 AT5G54010 349 / 2e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G097900 [exp] 221 / 1e-66 AT5G54010 498 / 1e-174 UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012726 [exp] 472 / 4e-164 AT2G22590 471 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10025711 [exp] 464 / 4e-161 AT2G22590 473 / 2e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10035951 [exp] 455 / 2e-157 AT2G22590 464 / 3e-161 UDP-Glycosyltransferase superfamily protein (.1) Lus10027850 [exp] 405 / 5e-138 AT5G49690 560 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10042242 [exp] 243 / 5e-77 AT5G65550 280 / 9e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10003154 [exp] 229 / 1e-69 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) Lus10008453 [exp] 217 / 4e-65 AT5G54010 539 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10013337 [exp] 212 / 3e-63 AT5G54010 452 / 1e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10043445 [exp] 206 / 7e-61 AT5G65550 225 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1) Lus10040178 [exp] 204 / 4e-60 AT5G54010 437 / 7e-151 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.001G030600.1 pacid=42793695 polypeptide=Potri.001G030600.1.p locus=Potri.001G030600 ID=Potri.001G030600.1.v4.1 annot-version=v4.1 ATGGCGGACGACTCTAAGCTTCATATTGCCATGTTTCCATGGCTAGCCTTTGGTCACATGATCCCATACTTGGAGCTAGCCAAACTCATAGCTCAAAAAG GACACAAAATCACATTCATCTCCACTCCTCGAAACATTGACCGCCTCCCAAAACTCCCTCCATATTTATCCCCTCTGATAAATTTCGTTAAACTCCCACT GCCTCATGCAGCCCATCTCCTTGAAGGCGATGAAGCCACCACCGATGTCCCATACAACAAGGTCCAATACCTTAAAGTAGCCTTTGATGGTCTTAAAGAG CCCATGACCAGGTTTCTTGCAACTTCTCATGATATTGATTATCTTCTTTATGATTTTGCACCTTACTGGCTTCCAGAGATAGCCACTGGTCTAGGCATTC CAAATGCTTTCTTTAGTATATTTTTGGGAGCCGCAGTGTGTTTTCTCAAACCAGCATCTTTGATCGAGGATCGCACAGAACCTGAACATTTTACTGTCCC TCCAAAGTCGATTCCATTTCCTACCACGGTTAGGTTCAAACTATTCGAGATCTTGAGGATCTTTGAATCCGTAACAGGTGATGCATCCGACGTTTCAGAT ATTTACCGCCTGCAAGAGGTGCTCAGATGCTGCCAGATGGTGGCTATAAGGAGCTGCATGGAGTTTGAACCTGAATGGTTGCACTTATTTCAAGAGCTTA TAGGGAAACCAGTTATACCAGTCGGTCTACTTGCCCCTACCGAGGATGATGCCGTCCGAGATGAAGGTAGTGGCATGTGGAAGTCAATGAAAGATTGGCT AGACAAGCAAGAAAAAGGATCGGTAGTTTATGTAGCTTTTGGAAGTGAAGCAAAACCAAGTCAAGTTGAGCTTACCGAGATAGCTCTAGGGCTAGAGTTG TCTGGGCTGCCATTCTTTTGGGTGCTGAGGACTCGTCGAGGCTTAACTGACAATGAAGTGATTAAGCTACCAGAAGGGTTTGAGGATCGAACCAGAGGGC GAGGTTTGGTGTTCACTAGCTGGGTTCCTCAGCTCAAGATCTTGGCTCATGACTCGGTTGGTGGGTTCTTGACTCACTCTGGTTGGAGTTCTGTGGTGGA AGCACTTCAACATGAGAGAGCTCTTATACTCTTGTCATTCTTGGCCGAACAAGGGTTGAACTCGAGGGTTTTCGAAGAGAAGAAAATAGGCTATCCAATA CCACGAGATGAGTCTGATGGATCGTTCACGAGAGACTCAGTAGCTGAGTCGTTGAGATTGGTAATGGTGAAGGAAGAGGGAAAGATTTACAGAGAGAAGG CTAAGGAGATGAAAGGCTTGTTTGGAAACAAGGATATACAAGACCAATACGTGGTCAACTTCTTACGTTACATCATGAGCCATAGACGATGTCTCGTGAC CAGAGAGAGCTCCAGCGTGATCAAGTAA
AA sequence Show only first row Show all	>Potri.001G030600.1 pacid=42793695 polypeptide=Potri.001G030600.1.p locus=Potri.001G030600 ID=Potri.001G030600.1.v4.1 annot-version=v4.1 MADDSKLHIAMFPWLAFGHMIPYLELAKLIAQKGHKITFISTPRNIDRLPKLPPYLSPLINFVKLPLPHAAHLLEGDEATTDVPYNKVQYLKVAFDGLKE PMTRFLATSHDIDYLLYDFAPYWLPEIATGLGIPNAFFSIFLGAAVCFLKPASLIEDRTEPEHFTVPPKSIPFPTTVRFKLFEILRIFESVTGDASDVSD IYRLQEVLRCCQMVAIRSCMEFEPEWLHLFQELIGKPVIPVGLLAPTEDDAVRDEGSGMWKSMKDWLDKQEKGSVVYVAFGSEAKPSQVELTEIALGLEL SGLPFFWVLRTRRGLTDNEVIKLPEGFEDRTRGRGLVFTSWVPQLKILAHDSVGGFLTHSGWSSVVEALQHERALILLSFLAEQGLNSRVFEEKKIGYPI PRDESDGSFTRDSVAESLRLVMVKEEGKIYREKAKEMKGLFGNKDIQDQYVVNFLRYIMSHRRCLVTRESSSVIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22590			UDP-Glycosyltransferase superf...		Potri.001G030600 [exp]	0	1
AT5G67400		RHS19	root hair specific 19 (.1)		Potri.017G064100 [exp]	4.00	0.8336
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G228300 [exp]	16.61	0.8621
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Potri.010G220500 [exp]	16.61	0.8382
AT3G46540			ENTH/VHS family protein (.1)		Potri.008G055600 [exp]	30.82	0.8302
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.014G152800 [exp]	66.48	0.8184
AT2G38790			unknown protein		Potri.008G025100 [exp]	75.16	0.8032
AT1G68450		PDE337	PIGMENT DEFECTIVE 337, VQ moti...		Potri.010G123700 [exp]	93.82	0.7999
AT2G26830		EMB1187	embryo defective 1187, Protein...		Potri.006G120700 [exp]	106.83	0.7903
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.016G129100 [exp]	107.80	0.7956
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Potri.009G062901 [exp]	111.91	0.7700

Compare expression of checked genes

Potri.001G030600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.