Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29940 1674 / 0 NRPA2 nuclear RNA polymerase A2 (.1) AT5G45140 414 / 3e-125 NRPC2 nuclear RNA polymerase C2 (.1) AT4G21710 305 / 2e-86 NRPB2, EMB1989 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) AT3G18090 281 / 8e-79 NRPD2B nuclear RNA polymerase D2B (.1) AT3G23780 281 / 3e-78 NRPE2, DMS2, DRD2, NRPD2a DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) ATCG00190 86 / 1e-16 ATCG00190.1, RPOB RNA polymerase subunit beta (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G003000 [exp] 384 / 2e-114 AT5G45140 1826 / 0.0 nuclear RNA polymerase C2 (.1) Potri.004G043200 [exp] 360 / 1e-105 AT4G21710 2271 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Potri.018G019100 [exp] 285 / 2e-79 AT3G23780 1694 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Potri.006G263900 [exp] 84 / 2e-17 AT3G23780 253 / 5e-77 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Potri.013G142232 [exp] 88 / 3e-17 ATCG00190 2015 / 0.0 RNA polymerase subunit beta (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026157 [exp] 1696 / 0 AT1G29940 1574 / 0.0 nuclear RNA polymerase A2 (.1) Lus10015446 [exp] 357 / 3e-104 AT4G21710 2298 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Lus10028778 [exp] 356 / 2e-103 AT5G45140 1711 / 0.0 nuclear RNA polymerase C2 (.1) Lus10017504 [exp] 320 / 9e-92 AT5G45140 1652 / 0.0 nuclear RNA polymerase C2 (.1) Lus10011182 [exp] 294 / 2e-82 AT4G21710 2293 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Lus10039677 [exp] 219 / 5e-58 AT3G23780 696 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Lus10011322 [exp] 179 / 2e-47 AT5G45140 468 / 2e-153 nuclear RNA polymerase C2 (.1) Lus10027166 [exp] 140 / 3e-33 AT3G23780 1435 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Lus10012207 [exp] 58 / 5e-10 AT5G45140 150 / 6e-44 nuclear RNA polymerase C2 (.1) Lus10039408 [exp] 45 / 0.0001 AT5G45140 129 / 9e-34 nuclear RNA polymerase C2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0410 [poplar] [flax] LEF-8-like PF00562 [poplar] [flax] RNA_pol_Rpb2_6 RNA polymerase Rpb2, domain 6 CL0410 [poplar] [flax] PF04560 [poplar] [flax] RNA_pol_Rpb2_7 RNA polymerase Rpb2, domain 7 CL0410 [poplar] [flax] PF04561 [poplar] [flax] RNA_pol_Rpb2_2 RNA polymerase Rpb2, domain 2 CL0410 [poplar] [flax] PF04563 [poplar] [flax] RNA_pol_Rpb2_1 RNA polymerase beta subunit CL0410 [poplar] [flax] PF04565 [poplar] [flax] RNA_pol_Rpb2_3 RNA polymerase Rpb2, domain 3 CL0410 [poplar] [flax] PF06883 [poplar] [flax] RNA_pol_Rpa2_4 RNA polymerase I, Rpa2 specific domain
Representative CDS sequence Show only first row Show all	>Potri.001G030750.1 pacid=42788014 polypeptide=Potri.001G030750.1.p locus=Potri.001G030750 ID=Potri.001G030750.1.v4.1 annot-version=v4.1 ATGGCGAAGAAGGGTGGAGAATTCAAGGAGCTGGAAGAGCTAGTGAGGCACCACATAGATTCCTTTGATTACATGGTGGATAGAGGATTGGAAATCATGT TAGATAACATCAAGCCTGTCAGAATTTATGATCCTCACACTGATACCTGTCTCTCACTATACTTGAGTAACCCTCGAATAAATGCTCCAATAAAGGACGT TCGTTCAAGGACAAATCGTAAGAGGCTACTTCCTTTTGAATGTCGACAGGCGAAGGTTTCGTATACTGGGAAGTTCGAGGCGGATGTTTGCTTTCAGTAT GATGGTAGACCAGTTATCAGAGAAAAGTATAATTTTGGGCAGTTTCCTATAATGTTGAAGTCAAAGCTTTGTTACTTGCGAAGTGCTGATCCCCAACAGC TTGTTTCCTTAAAAGAAGAGGCGTCAGAAGTGGGTGGTTACTTCATTTTGAATGGGATTGAGAGAGTTTTTCGATGTCTAATTATGCCGAAGCAGAACTA TCCAATGAGTATGACGCGAGGTTCATATCGTGAACGAAGGGAAGGACATACAGATAAAGCAGTTGTTATAAGGTGTGTAAGAGAATATCAATCTTCATTA ACAGATCACTCTTCAGTAACAGTTAGACTGTATTATCTTCGCAATGGAAGTGCCAGAGTTGGATTTTGGGTAAGAGGAAGGGAGTACTTGCTTCCTGTTG GCATTGTGTTGAAGGCCCTTGTTGAGACCACAGACCGGGAAATTTATGAGAATCTGACAAGTTACTATGATGAGAAATATGAGGAGGTAAAAGGAGCTGT TGGCTCTCAGCTTCTAGGTGAAAGGGCGAAAATTATTCTCGATGAAGTTCGGGTTGCGGCTCTTTTCACTCAGGATGACTGTCTGCAGCATATTGGGGAG CACTTTCAACCTGTTGTGGATGAGTTGGAAAACAAAACTCCATATACTGTGGCCCATGCTGTTTTGAAAGATTACGTGTTTGTTCATCTTCCTAATTTTC ACGACAAATTCAGTCTGCTGATCTTTATGTTGCAGAAACTTTTCTCTTTTGTCGATCATACTTCTGCACCAGACAACCCAGATTCCTTGCAAAATCAGGA CATCTTACTTCCCGGGCACCTGATGACCATTTATCTCAAGGAGAAACTAGAAGACTGGTTGCGTAAGGCGAAATCACTTGTTCAAGATGAGCTAACAAAA AATAACACTTTTAATTTCTTGGCAGTAGGAGATGTCAGGAAGGTCATGGATAAAAATTCCCCGGTAACAGTCAGTACAGCTGTGGAGTCTATGTTGAGAT CTGGAAGACTGGCAACGCAAACAGGTCTTGATTTGCAGCAGAGGGCTGGTTACACTGTTCAAGCAGAGAGGCTCAATTATCTGCGCTTTCTTTCTTTTTT CCGTGCTGTACATCGAGGAGCTTCCTTTGCTGGTGGTCGCACAACAAGTGTGCGGAAGTTGCTTCCTGAATCATGGGGTTTTCTTTGCCCAGTCCACACA CCTGATGGGGAGCCATGTGGGTTGCTGAACCACATGACTTGTTCTTGTCGTGTTACATCATATTTTGATTCGCAGGGAGTTGTTAAAGATTTTTTTGATA TAAGAAAATCTATCCTTGGTGTTTTGACCAGTCTTGGAATGATTGCTTCATTGCCAAAGCTTGTTCAAGCTGGCCCTCCTAAGGCTCTTTCTGTTCTTTT GGATGGTCGTGTCATTGGCTCTCTTCCTTCCAGTGAAATAGAGAAAGTTATTGCTCATTTGCGAAGATTAAAAGTGTCAGCGACTTCAGCGATTCCTGAT GATATGGAAGTTGGATATGTTCCTTTGAGCATTGGTGGTGCATATCCAGGTTTATACATCTCCACATATCCTTCCAGATTTATTCGCCCTGTTAGAAATA TTTCTATCCCTTGTGAGGAACGTCAAGATATTGAACTTATTGGACCATTTGAACAGGTTTTTATGGAAATAAAATGTCCAGATGGTGGAAATGGTGGAAG AAGTAATGCCTTTCCTGCAACTCATGAAGAAATTCACCCAACAAATATGCTCAGTGTGGTTGCTAATCTAACACCTTGGTCAGATCATAATCAAAGTCCA CGAAATATGTACCAGTGTCAGATGGCTAAACAAACAATGGCTTTCTCTTTACAATCTCTCCGCTTCCGTGCTGATCAGAAGATTTACCATCTTCAGACTC CTCAAACTCCCATTGTACGTACAGGAGCATACACGAAATATAGCATCGATGAGCATCCAACAGGGACAAATGCTATTGTTGCAGTGCTTGCATATACAGG ATATGATATGGAGGATGCCATGATCTTGAACAAGTCCTCTGTAGATCGTGGCATGTTTCATGGACAAATATACCAGACAGAAACGATCGATTTATCCGAT GAGGGCAGCAGGTCAGATCGATCCCACAGAAGATTTAGGAGGAGTAATACTGATAGGTCATCGCATTCCTTGATTGATTCAGATGGACTTCCATATGTTG GTCAGATAATAAATCCGAATGAGCCATATTGTAGCATTTATAATGACATAACAAATACATCAAAACCCAAGTATCGAAAAGGTTCAGAGCCTGCTATTGT TGACTATGTAGCTGTTGATACGAAAAGCAAGAAGCACCTTCAGAAGGTGAATATTCGTTTTCGTCATCCTAGAAACCCTATCATTGGTGATAAGTTTAGC AGTAGGCATGGACAGAAGGGTGTTTGCTCCCAGTTATGGCCAGATATTGATATGCCATTTTCTGGAGTTACTGGGATGCGTCCTGATCTGATTATCAATC CCCATGCTTTTCCTTCAAGAATGACAATTGCAATGCTTTTGGAATCCCTTGCTGCCAAGGGAGGTAGCTTAAATGGAAACTTTGTAGATGCTACACCATT TGCTAGTACAGTGAGGGCATCTAATGCAGGAGAGGCCAAATCAGAACCTGAATCACTTGTTGATGAACTTGGCAAGATGCTAAAATCTAAGGGCTTTAAT CATCACGGCGTGGAGGTTTTGTACAGTGGGGTTTATGGAACAGAACTCACATGTGAAATTTTTATTGGTCCTGTTTATTATCAGCGTCTTCGCCACATGG TTTCAGACAAATTTCAGGTCCGGTCGACTGGTCCGGTCGACCAGATTACCAGACAGCCTATTAAAGGAAGAAAGCGTGGTGGAGGTATTCGTTTTGGAGA AATGGAACGAGATTCAATGCTTGCCCACGGAGCTGCATACTTGTTGCATGATAGGCTCCATACTTGCTCTGATTATCACATTGCTGATGTATGTTCTATA TGTGGGAGCATTCTAACGACACATTACCAACCACAGAGGCGAATAGTGCGTGATATTGGTGGATTACCTCCTGTGAAGGCTCCCAAAAAAGTGGTATGCC ATGCATGCCAAACAAGCAAAGGGATAGAAACTGTTGCAATGCCTTATGTCTTTAGATATTTAGCTGCCGAATTAGCAGCTATGAACATAAAAATGACCCT CCACTTGAATGATGGAGCATGA
AA sequence Show only first row Show all	>Potri.001G030750.1 pacid=42788014 polypeptide=Potri.001G030750.1.p locus=Potri.001G030750 ID=Potri.001G030750.1.v4.1 annot-version=v4.1 MAKKGGEFKELEELVRHHIDSFDYMVDRGLEIMLDNIKPVRIYDPHTDTCLSLYLSNPRINAPIKDVRSRTNRKRLLPFECRQAKVSYTGKFEADVCFQY DGRPVIREKYNFGQFPIMLKSKLCYLRSADPQQLVSLKEEASEVGGYFILNGIERVFRCLIMPKQNYPMSMTRGSYRERREGHTDKAVVIRCVREYQSSL TDHSSVTVRLYYLRNGSARVGFWVRGREYLLPVGIVLKALVETTDREIYENLTSYYDEKYEEVKGAVGSQLLGERAKIILDEVRVAALFTQDDCLQHIGE HFQPVVDELENKTPYTVAHAVLKDYVFVHLPNFHDKFSLLIFMLQKLFSFVDHTSAPDNPDSLQNQDILLPGHLMTIYLKEKLEDWLRKAKSLVQDELTK NNTFNFLAVGDVRKVMDKNSPVTVSTAVESMLRSGRLATQTGLDLQQRAGYTVQAERLNYLRFLSFFRAVHRGASFAGGRTTSVRKLLPESWGFLCPVHT PDGEPCGLLNHMTCSCRVTSYFDSQGVVKDFFDIRKSILGVLTSLGMIASLPKLVQAGPPKALSVLLDGRVIGSLPSSEIEKVIAHLRRLKVSATSAIPD DMEVGYVPLSIGGAYPGLYISTYPSRFIRPVRNISIPCEERQDIELIGPFEQVFMEIKCPDGGNGGRSNAFPATHEEIHPTNMLSVVANLTPWSDHNQSP RNMYQCQMAKQTMAFSLQSLRFRADQKIYHLQTPQTPIVRTGAYTKYSIDEHPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMFHGQIYQTETIDLSD EGSRSDRSHRRFRRSNTDRSSHSLIDSDGLPYVGQIINPNEPYCSIYNDITNTSKPKYRKGSEPAIVDYVAVDTKSKKHLQKVNIRFRHPRNPIIGDKFS SRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESLAAKGGSLNGNFVDATPFASTVRASNAGEAKSEPESLVDELGKMLKSKGFN HHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGPVDQITRQPIKGRKRGGGIRFGEMERDSMLAHGAAYLLHDRLHTCSDYHIADVCSI CGSILTTHYQPQRRIVRDIGGLPPVKAPKKVVCHACQTSKGIETVAMPYVFRYLAAELAAMNIKMTLHLNDGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29940		NRPA2	nuclear RNA polymerase A2 (.1)		Potri.001G030750 [exp]	0	1
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Potri.006G055300 [exp]	1.00	0.9322
AT3G11964			RNA binding;RNA binding (.1)		Potri.016G062600 [exp]	2.00	0.9243
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Potri.013G125800 [exp]	4.24	0.9026
AT2G18900			Transducin/WD40 repeat-like su...		Potri.018G091100 [exp]	4.89	0.8671
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Potri.008G052400 [exp]	5.74	0.8691
AT2G18220			Noc2p family (.1)		Potri.001G012800 [exp]	6.00	0.9004
AT4G16630			DEA(D/H)-box RNA helicase fami...		Potri.005G241300 [exp]	6.00	0.8854
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Potri.015G003000 [exp]	6.32	0.8892
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Potri.008G043400 [exp]	7.07	0.8984
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Potri.013G079600 [exp]	7.48	0.8946

Compare expression of checked genes

Potri.001G030750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.