Plant FIBer expression Database

Potri.001G030900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G15140 94 / 2e-21 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G194300
[exp]
757 / 0 AT3G15140 96 / 8e-22 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Potri.011G141300
[exp]
99 / 4e-23 AT3G15140 397 / 6e-139 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024133
[exp]
607 / 0 AT3G15140 91 / 6e-20 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Lus10005381
[exp]
551 / 0 AT3G15140 90 / 3e-20 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Lus10009194
[exp]
80 / 2e-16 AT3G15140 298 / 1e-100 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Lus10011629
[exp]
41 / 0.0004 ND 39 / 6e-04
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0219 RNase_H PF00929 RNase_T Exonuclease
CL0167 Zn_Beta_Ribbon PF06839 zf-GRF GRF zinc finger
Representative CDS sequence
>Potri.001G030900.5 pacid=42792698 polypeptide=Potri.001G030900.5.p locus=Potri.001G030900 ID=Potri.001G030900.5.v4.1 annot-version=v4.1
ATGATGGCCCTTGAAAGTAAAGAAACTATGCAAAGGAGCTGTGAGGCCTCCTTAAAATGCCTCCAAATCAAGGGATTCCCTTGTGGGAATTCCTTTGAAG
GGTTTCCTGAGTTTAAAGAAGAAATTGGTGCTCACCCAGGCAGGGATGTTGTTGAACCAGTTCACTCACTAAGCAGTGAGTTTCTTGAACTTCCAAGTGA
ATTTCACAACAAACCTGCCTACCATCATGATTTTGGCTCATGGCCGACCTTTTATCCAGACTCTCAAAAGATGCAGCAGCACCAAATGAATTGTTTTGAG
AGCCAGTTTTATCCCTTTCCTCCAGAGACTCGATTTCAGCATGCTCCTTTCAGTATGTTTTCTCAAGGTCATCCATTTGAGATCCAGTTCCAAGATTTTC
AATATTTTGTGGTCATAGATTTTGAGGCTACTTGCGACAAGGAAAGAAATCCTCATCCACAAGAGATAATTGAGTTTCCATCTGTCATCGTGAGCAGTGT
AACTGGTCAACTAGAAGCTTGTTTTCAGACATATGTGCGGCCAACTTGCAATCAGCTCCTGAGTGATTTCTGCAAGGATCTGACTGGTATCCAGCAAATC
CAGGTGGACAGAGGTGTTACTCTTAGTGAGGCACTCCTCAGGCATGATAAATGGCTTGAGAATAAAGGGATAAAAAACACCAAATTTGCCGTGGTGACAT
GGTCGAACTGGGATTGTCGGGTGATGTTGGAATCTGAGTGCCGATTCAAGAAGATCAGGAAGCCTCCTTATTTTAACCGATGGATCAACTTAAAAGTTCC
TTTCTGTGACATATTTGGTGGTGCAAGATGTCTGAAGGAGGCTGTTGAGATGGCAGGCCTACACTGGCAGGGCCGTGCTCACTGTGGGCTGGATGATGCC
AAAAATACCGCTCGTCTGCTTGCTCTACTTATGCGCCGGGGCATCAGATTCTCTATCACCAACTCACTGATGTGGCACACAACTGACAGTTCATTGTCAT
GCAAGCAGTCCGCTGAGAACCTGTCCCTTGCACCACACCAACCTCATAAGCTTAAGGAAATTCATATTCCTGTTTTCCCATATCACCCCTTCTGTTTCTG
TGGTGTGAAGAGCAGCAAAGGAATGGTTCGAAAGCCTGGACCGAAGCAAGGTAGCCTGTTCTTTGGTTGTGGCAACTGGACTGCCACTAGAGGTGCCCGC
TGTCATTACTTTGAATGGGCATCTCCTTGA
AA sequence
>Potri.001G030900.5 pacid=42792698 polypeptide=Potri.001G030900.5.p locus=Potri.001G030900 ID=Potri.001G030900.5.v4.1 annot-version=v4.1
MMALESKETMQRSCEASLKCLQIKGFPCGNSFEGFPEFKEEIGAHPGRDVVEPVHSLSSEFLELPSEFHNKPAYHHDFGSWPTFYPDSQKMQQHQMNCFE
SQFYPFPPETRFQHAPFSMFSQGHPFEIQFQDFQYFVVIDFEATCDKERNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQI
QVDRGVTLSEALLRHDKWLENKGIKNTKFAVVTWSNWDCRVMLESECRFKKIRKPPYFNRWINLKVPFCDIFGGARCLKEAVEMAGLHWQGRAHCGLDDA
KNTARLLALLMRRGIRFSITNSLMWHTTDSSLSCKQSAENLSLAPHQPHKLKEIHIPVFPYHPFCFCGVKSSKGMVRKPGPKQGSLFFGCGNWTATRGAR
CHYFEWASP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G15140 Polynucleotidyl transferase, r... Potri.001G030900
[exp]
0 1
AT5G60790 ABCF1, ATGCN1 ARABIDOPSIS THALIANA GENERAL C... Potri.009G007800
[exp]
7.93 0.7656 Pt-PNATH.1
AT3G05700 Drought-responsive family prot... Potri.013G011200
[exp]
8.48 0.7739
AT1G14140 Mitochondrial substrate carrie... Potri.010G165900
[exp]
16.91 0.7689
AT3G52220 unknown protein Potri.008G019100
[exp]
24.41 0.7626
AT2G33740 CUTA Nitrogen regulatory PII-like, ... Potri.002G103700
[exp]
27.92 0.7281 Pt-CUTA.1
AT2G45630 D-isomer specific 2-hydroxyaci... Potri.014G073400
[exp]
28.80 0.7615
AT5G08170 ATAIH, EMB1873 EMBRYO DEFECTIVE 1873, AGMATIN... Potri.015G055300
[exp]
29.49 0.7428
AT1G31340 NEDD8, ATRUB1, ... ARABIDOPSIS THALIANA RELATED T... Potri.007G067500
[exp]
30.29 0.7605 Pt-UBQ7.1
AT5G48370 Thioesterase/thiol ester dehyd... Potri.002G240100
[exp]
30.59 0.6779
AT5G13470 unknown protein Potri.003G203900
[exp]
35.39 0.7561

Potri.001G030900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.