Plant FIBer expression Database

Pt-PNT1.1 (Potri.001G031500) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-PNT1.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G22130 644 / 0 PNT1 PEANUT 1, mannosyltransferase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013349
[exp]
672 / 0 AT5G22130 633 / 0.0 PEANUT 1, mannosyltransferase family protein (.1.2)
Lus10000321
[exp]
208 / 2e-64 AT5G22130 200 / 2e-78 PEANUT 1, mannosyltransferase family protein (.1.2)
Lus10006320
[exp]
44 / 0.0002 AT1G63110 624 / 0.0 GPI transamidase subunit PIG-U (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0111 GT-C PF06728 PIG-U GPI transamidase subunit PIG-U
Representative CDS sequence
>Potri.001G031500.1 pacid=42789372 polypeptide=Potri.001G031500.1.p locus=Potri.001G031500 ID=Potri.001G031500.1.v4.1 annot-version=v4.1
ATGAAATGGCTAAAAATCCGTACCCTGCTTCTCCTCTCAGCCATTTTTCGTGTTATTCTAATTGTGTACGGAGAGTGGCAAGATACCCACATGGAAGTTA
GGTACACAGATGTAGATTACCTTGTATTTTCTGATGCTGCTTCATTAATGGCTAATGGTGAATCTCCTTATAAAAGAACTACCTATAGATACTCACCTTT
GCTTGCCTTTTTATTGACACCCAATTCTTTTATTCATCGTTCTTGGGGCAAATTCATCTTCTCTGCTGCAGATTTATTTGTGGGCTCATTTATTCAGTAC
ATTTTGAAGAAACGTGAGGTCCCTGAGGATATGTGTTTGTATTCTGCAATGGTATGGCTGCTGAATCCATTTACCTTCACCATTGGAACCCGTGGGAACT
GCGAGCCTATCGTGTGTGCCATGATTTTATGGATCATTATCTGTCTTATCAATGGTAATGTTGTCCAAGCTGCATTTTGGTATGGATTGGTTGTCCATTT
CAGGATTTATCCCATAATCTATGCTCTTCCTATAGTTCTGGTTCTTGATCCGCATTCCTTCCAATCTGGTCAGAAGCCACGTCTTGTGAATTGGAAATCT
AGTCAAGATAATGCGTCTCACGGTCGCAAAGAAGGATCTGAAGTATATGGTGTATGGACTGCATTGAAAACCATATTTACAAGAGGGAGAATTATGTTTG
CAATGGTCTCGGGATCTGTTTTCATGCTATGTACTGGTCTTTTCTTCTATTTATACAGATGGGAGTTTTTAAATGAGGCGTTGCTGTACCATCTCACTCG
TACAGATCCAAGACATAATTTTTCCATCTATTTCTATCACATATATCTCCATGTTGAACATGAATTTTCAGTAGTGGAGAAGCTCATCTCTTTTTTGCCC
CAATTGATAGTGCAGCTGGTTCTTATTATTCGCTTTGCTCAAGACCTTCCGTTCTGCCTTTTCTTGCAGACAGTGGCTTTTGTGGCATTCAATAAGGTAA
TTACCGCACAGTACTTTGTATGGTTTTTTTGCTTGTTGCCTCTAATACTGCCATGGAGCAAAATGAAGCTGAAGTGGGAAGGCTTAAGTTGTGTACTTCT
ATGGATGGGAGCTCAGACCCATTGGTTGTTGTGGGGTTATTTACTTGAATTTAAGGGGAAAAATGTTTTCCTCCAGCTTTGGTTGGCAGGCTTAGTGTTT
CTGGCTGCCAATTCTTTTCTTCTGATCATGTTCATCCGGCACCACAAATACTCTCCCGTATTCAAACAGTTTGCGCCAGCAACTTCAGGGAATAGAGATA
AATCTGAGTGA
AA sequence
>Potri.001G031500.1 pacid=42789372 polypeptide=Potri.001G031500.1.p locus=Potri.001G031500 ID=Potri.001G031500.1.v4.1 annot-version=v4.1
MKWLKIRTLLLLSAIFRVILIVYGEWQDTHMEVRYTDVDYLVFSDAASLMANGESPYKRTTYRYSPLLAFLLTPNSFIHRSWGKFIFSAADLFVGSFIQY
ILKKREVPEDMCLYSAMVWLLNPFTFTIGTRGNCEPIVCAMILWIIICLINGNVVQAAFWYGLVVHFRIYPIIYALPIVLVLDPHSFQSGQKPRLVNWKS
SQDNASHGRKEGSEVYGVWTALKTIFTRGRIMFAMVSGSVFMLCTGLFFYLYRWEFLNEALLYHLTRTDPRHNFSIYFYHIYLHVEHEFSVVEKLISFLP
QLIVQLVLIIRFAQDLPFCLFLQTVAFVAFNKVITAQYFVWFFCLLPLILPWSKMKLKWEGLSCVLLWMGAQTHWLLWGYLLEFKGKNVFLQLWLAGLVF
LAANSFLLIMFIRHHKYSPVFKQFAPATSGNRDKSE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G22130 PNT1 PEANUT 1, mannosyltransferase ... Potri.001G031500
[exp]
0 1 Pt-PNT1.1
AT5G65270 AtRABA4a RAB GTPase homolog A4A (.1) Potri.005G073000
[exp]
4.35 0.8449 Pt-ATGB3.3
AT3G52300 ATPQ "ATP synthase D chain, mitocho... Potri.008G043800
[exp]
6.48 0.8562
AT3G25040 ERD2B endoplasmic reticulum retentio... Potri.001G315800
[exp]
10.29 0.8785
AT3G22845 emp24/gp25L/p24 family/GOLD fa... Potri.010G081700
[exp]
12.40 0.8562
AT5G64813 LIP1 Light Insensitive Period1, Ras... Potri.005G085100
[exp]
15.23 0.8227
AT3G25040 ERD2B endoplasmic reticulum retentio... Potri.017G056000
[exp]
16.18 0.8720
AT1G63000 UER1, NRS/ER "UDP-4-KETO-6-DEOXY-D-GLUCOSE-... Potri.001G112000
[exp]
18.73 0.8508
AT4G12590 Protein of unknown function DU... Potri.016G013100
[exp]
22.27 0.8629
AT5G13050 5-FCL 5-formyltetrahydrofolate cyclo... Potri.012G072800
[exp]
23.23 0.7975
AT1G71900 Protein of unknown function (D... Potri.019G084600
[exp]
33.82 0.8091

Potri.001G031500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.