Plant FIBer expression Database

Potri.001G031700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G09860 919 / 0 AtTHO1, AtHPR1 nuclear matrix protein-related (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G194000
[exp]
1147 / 0 AT5G09860 902 / 0.0 nuclear matrix protein-related (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024130
[exp]
969 / 0 AT5G09860 933 / 0.0 nuclear matrix protein-related (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF11957 efThoc1 THO complex subunit 1 transcription elongation factor
Representative CDS sequence
>Potri.001G031700.1 pacid=42791813 polypeptide=Potri.001G031700.1.p locus=Potri.001G031700 ID=Potri.001G031700.1.v4.1 annot-version=v4.1
ATGGAAGAATTCAGGAGGGCTATATTGCAGCCTGGGCCAGTTGAAACTTTTGCTCTTAAGACTGTTCAAGAATTTATTAAACCTCAGAAGCAAACTAAAT
TGGTGCAAGATGAGAATCAATTGTTGGAGAATATGCTGCGGACGTTGCTTCAGGAGCTTGTATCTTCTGCTGCACAGTCGGGGGAGGAAATTATGTTGTC
TGGGAAGTCAATTGATGATGAAGAAAACTCTCAGGGTCAAATTCCTCGTTTACTAGATGCTGTTCTATATCTATGTGAGAGAGAACATATTGAGGGTGGT
ATGATATTCCAGTTGTTGGAAGATTTGACCGAAATGTCTACAATGAGAAATTGCAAGGATATTTTTGGTTACATAGAGAGTAAGCAAGATATACTTGGAA
AGCAAGAACTTTTTGCTCGTGGAAAACTTGTAATGTTGAGAACATGCAATCAACTTCTCCGTCGCCTTTCAAAGGCAAATGATGTCGTGTTTTGTGGACG
AATTCTTATGTTTCTGGCACACTTTTTTCCACTATCTGAGCGCTCAGCTGTAAACATTAAAGGAGTTTTCAACACATCAAATGAGACTAAATATGAGAAA
GAGCCACCAGCTGCCATTTCTCTTGACTTCAACTTCTATAAAACCTTGTGGAGTTTACAGGAGTACTTCTGTGACCCTTCCCTTACTCTTTCTCCTATCA
AGTGGCAAAAGTTCTCATCGAGTTTGATGGTTGTCTTGAATACCTTCGAAGCTCAGCCTTTGAGTGAGGAAGAAGGAGATGCTAACAATTTGGAGGAAGA
GGCAGCAGCATTTAACATAAAGTATCTCACAAGCAGTAAACTGATGGGTTTAGAGTTAAAAGATCCTAGTTTTCGCCGCCATGTTCTTGTGCAGTGTCTC
ATACTGTTTGACTACCTTAAGGCTCCTGGAAAGAATGACAAAGATTTAACATCTGAAAGCATGAAAGAAGAAATAAGATCTCGTGAGGAGCATGTTAAAA
AATTACTTGAAATGACTCCACCTAAAGGGAAAGATTTTCTTCACATGGTTGAGCATATACTAGAACGTGAAAAGAATTGGTTGTGGTGGAAACGTGATGG
TTGCCCTCCATTTGAAAAACAGCCAATAGAGAATAAAACAGTCCAAGATGGAGGTAAAAAACGTAGGCCAAGGTGGAGGCTAGGAAATAAAGAACTCTCT
CAATTGTGGAAGTGGGCAGATCAGAATCCGAATGCATTGACTGATCCTCAACGTGTTCGTACTCCTATTATCACAGATTACTGGAAACCATTGGCAGAAG
ATATGGATCCATCAGCTGGAATAGATGCTGAATATCACCACAAGAATAACCGGGTTTATTGCTGGAAAGGTCTTCGTTTCTCTGCTCGGCAGGATTTGGA
TGGTTTCTCTCGATTTACTGACCATGGTATTGAAGGAGTTGTTCCTTTAGAACTCTTGCCACCAGATGTCCGGTCCAAATACCAAGCTAAACCTAATGAC
AGGTCTAAACGTGCCAAAAAGGATGAGCCAAAGGGTGCTTTACATCAAGTGGAAGATAATCAGATATCAACACCTGCAAGCGAGATTGACGGTGAAGGAA
TTAGAATTGATCTTGAAGCCTCTGCTGCACCAATGGACACTGATGTCACAGCCACAACTGGCAGTATTTCACAAAGCGGCACTCCAACACCAGATGAACA
TCAAAAGCAAGGCTCCGACACGGATGGTGGTCAAGAGGCAGGCCAGTTAGAAGCAGACGCTGAAGCAGAGGCAGGGATGATAGATGGAGAGACAGATGCA
GAGGTAGATTTAGAAGCAGTTGGCTGA
AA sequence
>Potri.001G031700.1 pacid=42791813 polypeptide=Potri.001G031700.1.p locus=Potri.001G031700 ID=Potri.001G031700.1.v4.1 annot-version=v4.1
MEEFRRAILQPGPVETFALKTVQEFIKPQKQTKLVQDENQLLENMLRTLLQELVSSAAQSGEEIMLSGKSIDDEENSQGQIPRLLDAVLYLCEREHIEGG
MIFQLLEDLTEMSTMRNCKDIFGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEK
EPPAAISLDFNFYKTLWSLQEYFCDPSLTLSPIKWQKFSSSLMVVLNTFEAQPLSEEEGDANNLEEEAAAFNIKYLTSSKLMGLELKDPSFRRHVLVQCL
ILFDYLKAPGKNDKDLTSESMKEEIRSREEHVKKLLEMTPPKGKDFLHMVEHILEREKNWLWWKRDGCPPFEKQPIENKTVQDGGKKRRPRWRLGNKELS
QLWKWADQNPNALTDPQRVRTPIITDYWKPLAEDMDPSAGIDAEYHHKNNRVYCWKGLRFSARQDLDGFSRFTDHGIEGVVPLELLPPDVRSKYQAKPND
RSKRAKKDEPKGALHQVEDNQISTPASEIDGEGIRIDLEASAAPMDTDVTATTGSISQSGTPTPDEHQKQGSDTDGGQEAGQLEADAEAEAGMIDGETDA
EVDLEAVG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G09860 AtTHO1, AtHPR1 nuclear matrix protein-related... Potri.001G031700
[exp]
0 1
AT3G20480 AtLpxK lipid X K, tetraacyldisacchari... Potri.001G418800
[exp]
1.00 0.8464
AT1G47720 OSB1 Organellar Single-stranded, Pr... Potri.002G129166
[exp]
1.73 0.8224
AT5G28530 FAR1_related FRS10 FAR1-related sequence 10 (.1) Potri.016G007300
[exp]
4.00 0.8265
AT5G11350 DNAse I-like superfamily prote... Potri.018G032300
[exp]
4.69 0.7933
AT1G53040 Protein of unknown function (D... Potri.011G119300
[exp]
6.00 0.8023
AT3G53690 RING/U-box superfamily protein... Potri.018G064400
[exp]
7.74 0.7954
AT4G39420 unknown protein Potri.007G078650
[exp]
15.87 0.8218
AT3G15351 unknown protein Potri.014G057550
[exp]
16.58 0.7451
AT1G03610 Protein of unknown function (D... Potri.017G152601
[exp]
17.17 0.8025
AT3G01720 unknown protein Potri.001G336400
[exp]
20.90 0.7733

Potri.001G031700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.