Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06980 75 / 5e-15 unknown protein AT3G12320 72 / 4e-14 unknown protein AT5G64170 62 / 5e-10 dentin sialophosphoprotein-related (.1.2) AT3G54500 42 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G193800 [exp] 571 / 0 AT3G12320 66 / 5e-12 unknown protein Potri.001G205800 [exp] 59 / 2e-09 AT5G64170 334 / 6e-106 dentin sialophosphoprotein-related (.1.2) Potri.T126606 [exp] 55 / 3e-08 AT3G54500 191 / 2e-56 unknown protein Potri.003G200600 [exp] 56 / 4e-08 AT3G54500 298 / 3e-93 unknown protein Potri.T127206 [exp] 56 / 4e-08 AT3G54500 355 / 2e-113 unknown protein Potri.T126406 [exp] 55 / 4e-08 AT3G54500 191 / 6e-55 unknown protein Potri.001G025100 [exp] 51 / 1e-06 AT3G54500 325 / 4e-102 unknown protein Potri.T126906 [exp] 47 / 1e-05 AT3G54500 156 / 4e-41 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005384 [exp] 176 / 3e-51 AT3G12320 79 / 1e-16 unknown protein Lus10024129 [exp] 176 / 6e-51 AT3G12320 80 / 8e-17 unknown protein Lus10008671 [exp] 160 / 4e-45 AT3G12320 65 / 1e-11 unknown protein Lus10026150 [exp] 150 / 1e-41 AT5G06980 66 / 4e-12 unknown protein Lus10009319 [exp] 59 / 4e-09 AT1G01860 417 / 4e-137 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1) Lus10015846 [exp] 58 / 1e-08 AT5G64170 225 / 8e-66 dentin sialophosphoprotein-related (.1.2) Lus10039553 [exp] 47 / 3e-05 AT3G54500 316 / 3e-98 unknown protein Lus10024170 [exp] 45 / 0.0001 AT3G54500 305 / 5e-94 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G031800.11 pacid=42791810 polypeptide=Potri.001G031800.11.p locus=Potri.001G031800 ID=Potri.001G031800.11.v4.1 annot-version=v4.1 ATGGAGTGGTATTCTGGAAGTGGTATTGATGATTTTGTGGTTCCAGAGGATCGAGAAGTATATGATAGGCTTCCATCACCAGAGAGTTGGTCGAAATGGT GTGCAGATGCATCAGAAAGTCATGAGTTTTCTAACAAACGCTTTCTTATGGATTCAAAATTGACTGGGGAGGAACTCAAATTCAATGGTGAAATTTTGAG CAAAGAAGTTGAAAGTTTCTACAATGGTAAAGATCAGTCTAGTGGTTCAAGCATCAGTGGAAGATTATCTGAAGAGTCACTTCCCCAGACTGCTCTTTCA TGTGACCAGCCAGATTACCAGCTTGATGATCTTTCAGAAATCGAACAACTGGATGAATTTTTCCTGAGTTCCTTTCTCGAGGATCTACCCAGGAATGAAA ATCTTAACGGCTCGTTTTGCTTTTCTGCTGAAGCAGAATGTGGCATGGCATCTGCTGACAATCGCTTCACAGACACAATGTCAGATTTGCAAAGTATCTC GAATGATGCACATGGCATGGGAAGCTCAAAGTATCTCAAAACACATGCATTTTCTCCATCATTAAGTTGGGAGGAAGGTGAAGTTGCTGCTTCACACTTC AATCCATGCAACTCAGACCAAAAGGATTTGGCACCGGTAAAGGCATCGCTGGTTAATGTCTTGGTCCCTTCTGAGCATGATGGTATGATTGGACTTGTTG ACGAGGAAACATCTCTTCAACAATCTACGCTACAGGAGCTAGAAATGGTTATGGCCCAGTTAAATGATAAGACTAGAATTTGCTTTCGTGATGCCTTGTA CCGGCTAGCCAGCAATTCAAAGCAACATCCTATAGAACAGGACCAAAATGGAGACCTGTCCATGGAAACACCGGGTACTGGTGAAGATGAGAAAATGGGG TCTGGTGGAAAGACGACAGTCGAAATGGAGACCAACGCCATTGACAGAGCCATTGCAAATCTCATGTTCAGTAAGATGGACCTAAACATACGAGATTTTC CTGTCTCAGCACCAGTAAATTCCAAGCAAGGAATTTCCAGAGAAACAAAACCCCTAAATTGCCGCTGGAATGAGCCTCAAGGCCACGATCTCCCTTCCTA TCCAAATTTCCGAGGTGATGCTGAGGTTCCAATCCTTGGTCATGGATATCGACAGATAAGAGCAAATCCAGGCAAGCATATGTGA
AA sequence Show only first row Show all	>Potri.001G031800.11 pacid=42791810 polypeptide=Potri.001G031800.11.p locus=Potri.001G031800 ID=Potri.001G031800.11.v4.1 annot-version=v4.1 MEWYSGSGIDDFVVPEDREVYDRLPSPESWSKWCADASESHEFSNKRFLMDSKLTGEELKFNGEILSKEVESFYNGKDQSSGSSISGRLSEESLPQTALS CDQPDYQLDDLSEIEQLDEFFLSSFLEDLPRNENLNGSFCFSAEAECGMASADNRFTDTMSDLQSISNDAHGMGSSKYLKTHAFSPSLSWEEGEVAASHF NPCNSDQKDLAPVKASLVNVLVPSEHDGMIGLVDEETSLQQSTLQELEMVMAQLNDKTRICFRDALYRLASNSKQHPIEQDQNGDLSMETPGTGEDEKMG SGGKTTVEMETNAIDRAIANLMFSKMDLNIRDFPVSAPVNSKQGISRETKPLNCRWNEPQGHDLPSYPNFRGDAEVPILGHGYRQIRANPGKHM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06980			unknown protein		Potri.001G031800 [exp]	0	1
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Potri.014G106800 [exp]	1.41	0.8738
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Potri.002G180800 [exp]	2.00	0.8662
AT4G27310	CO		B-box type zinc finger family ...		Potri.013G150500 [exp]	2.23	0.8432
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.004G121800 [exp]	4.00	0.8564
AT4G38960	CO		B-box type zinc finger family ...		Potri.009G124400 [exp]	6.48	0.7690
AT5G01015			unknown protein		Potri.016G143400 [exp]	10.09	0.7463
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Potri.016G083900 [exp]	16.24	0.8639
AT5G64170			dentin sialophosphoprotein-rel...		Potri.001G205800 [exp]	21.35	0.7307
AT4G38960	CO		B-box type zinc finger family ...		Potri.007G015200 [exp]	24.26	0.7481
AT1G75180			Erythronate-4-phosphate dehydr...		Potri.002G260900 [exp]	25.88	0.7235

Compare expression of checked genes

Potri.001G031800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.