Plant FIBer expression Database

Potri.001G032000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G74320 531 / 0 Protein kinase superfamily protein (.1)
AT4G09760 457 / 3e-162 Protein kinase superfamily protein (.1.2.3)
AT1G71697 448 / 1e-158 ATCK1 choline kinase 1 (.1)
AT2G26830 199 / 1e-60 EMB1187 embryo defective 1187, Protein kinase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G193000
[exp]
666 / 0 AT1G74320 523 / 0.0 Protein kinase superfamily protein (.1)
Potri.005G197500
[exp]
503 / 5e-179 AT4G09760 486 / 1e-172 Protein kinase superfamily protein (.1.2.3)
Potri.002G063700
[exp]
496 / 2e-177 AT4G09760 481 / 2e-171 Protein kinase superfamily protein (.1.2.3)
Potri.006G120700
[exp]
184 / 1e-54 AT2G26830 524 / 0.0 embryo defective 1187, Protein kinase superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026145
[exp]
544 / 0 AT1G74320 499 / 6e-176 Protein kinase superfamily protein (.1)
Lus10024127
[exp]
522 / 0 AT1G74320 484 / 4e-171 Protein kinase superfamily protein (.1)
Lus10028728
[exp]
478 / 7e-170 AT4G09760 469 / 1e-166 Protein kinase superfamily protein (.1.2.3)
Lus10028696
[exp]
474 / 1e-168 AT4G09760 464 / 8e-165 Protein kinase superfamily protein (.1.2.3)
Lus10005386
[exp]
475 / 6e-168 AT1G74320 426 / 1e-148 Protein kinase superfamily protein (.1)
Lus10019424
[exp]
172 / 8e-48 AT2G26830 471 / 1e-161 embryo defective 1187, Protein kinase superfamily protein (.1)
Lus10008675
[exp]
0 / 1 AT1G74320 91 / 2e-22 Protein kinase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0016 PKinase PF01636 APH Phosphotransferase enzyme family
Representative CDS sequence
>Potri.001G032000.3 pacid=42792459 polypeptide=Potri.001G032000.3.p locus=Potri.001G032000 ID=Potri.001G032000.3.v4.1 annot-version=v4.1
ATGGGTCCTGTAGAAAATCCTGTAAACAATAAAGAATATAGGATACCAGGAGAGGCAAAGGAGATGTTGAAATCGTTGGCATCCAAGTGGGAAGATATTG
ATGATGCAAATTCATTGCAGGTGATCCCTTTAAAGGGTGCAATGACCAATGAGGTTTTCCAAATAAAGTGGCCGACAAAGACACAGAATATGTCGCGTAA
GGTTGTAGTCAGGATCTATGGTGAAGGAGTGGAGGTGTTTTTTGATCGAGACACTGAGATTCTTACGTTTGAGTTCATGTCGAAGCAAGGGCAGGGACCT
CGTTTACTTGGGCGGTTCTCAAATGGACGGATTGAAGAGTTCATCCATGCACGGACACTATCAGCCTCTGATCTGCATGATCCAGATATATCTGCTCTTA
TAGCAGCTAAAATGAAGGAGTTTCATGGTCTTGAGATGCCAGGTCCAAAGGATGTCTCTCTGTGGCACAGATTGCGAAATTGGCTCAAAACAGCTAAGAG
TTTGTGTACTCCAGAAGAAGCTAAAGACTTTCGCTTGGATTCCATTGAGGATGAAATTTCCTTAATTGAGAAGGAACTCTCAGGAGATCAAAGTATAGGG
TTTTGCCATAATGATTTACAATATGGCAACATAATGATTGATGAAGAGACAAGATCAATAACTATAATTGACTATGAGTATGCAAGTTACAACCCTATTG
CTTTTGATATAGCAAACCACTTCTGTGAGATGACTGCTGACTATCATACAGATACACCCCATATTTTGGACTATAGTAAATACCCTGGTTTGGAGGAGCG
TCAAAGATTTCTTCACTTATATCTGAGTTCCTCAGGTGGTCTACCTAGTGACATTGAATTGGAGCAGCTGCTCGAAAATGTTGAGAAGTATAAGCTTGCG
AGCCATCTTTTTTGGGGATTATGGGGGATAATATCGGAACATGTCAACGAAATTGACTTTGACTACATGGAATATGCAAGGCAGAGGTTTGAACAGTACT
GTTTAAGGAAGCCTGCTTTATTGGGTTCTTCAGGAACCACCCCTGATGTAGCTTTGACTGATGGTAATTATACTATCTAA
AA sequence
>Potri.001G032000.3 pacid=42792459 polypeptide=Potri.001G032000.3.p locus=Potri.001G032000 ID=Potri.001G032000.3.v4.1 annot-version=v4.1
MGPVENPVNNKEYRIPGEAKEMLKSLASKWEDIDDANSLQVIPLKGAMTNEVFQIKWPTKTQNMSRKVVVRIYGEGVEVFFDRDTEILTFEFMSKQGQGP
RLLGRFSNGRIEEFIHARTLSASDLHDPDISALIAAKMKEFHGLEMPGPKDVSLWHRLRNWLKTAKSLCTPEEAKDFRLDSIEDEISLIEKELSGDQSIG
FCHNDLQYGNIMIDEETRSITIIDYEYASYNPIAFDIANHFCEMTADYHTDTPHILDYSKYPGLEERQRFLHLYLSSSGGLPSDIELEQLLENVEKYKLA
SHLFWGLWGIISEHVNEIDFDYMEYARQRFEQYCLRKPALLGSSGTTPDVALTDGNYTI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G74320 Protein kinase superfamily pro... Potri.001G032000
[exp]
0 1
AT1G74780 Nodulin-like / Major Facilitat... Potri.015G067000
[exp]
1.00 0.8201
AT5G53420 CCT motif family protein (.1.2... Potri.012G014000
[exp]
3.16 0.7745
AT3G45600 TET3 tetraspanin3 (.1) Potri.009G015100
[exp]
10.95 0.7452
AT4G25280 P-loop containing nucleoside t... Potri.015G129000
[exp]
15.49 0.7353
AT5G41130 Esterase/lipase/thioesterase f... Potri.001G324400
[exp]
35.19 0.7455
AT3G05030 ATNHX2, NHX2 sodium hydrogen exchanger 2 (.... Potri.014G134900
[exp]
62.92 0.7158 NHX1.2
AT3G62270 HCO3- transporter family (.1) Potri.012G081800
[exp]
71.06 0.7077
AT1G72660 P-loop containing nucleoside t... Potri.001G170300
[exp]
76.31 0.7061 Pt-DRG1.1
AT1G22770 FB, GI gigantea protein (GI) (.1) Potri.002G064400
[exp]
84.38 0.6903 Pt-GI.2
AT5G63520 unknown protein Potri.015G098700
[exp]
92.37 0.6845

Potri.001G032000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.