Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28050 223 / 3e-70 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40240 207 / 1e-63 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G40230 206 / 3e-63 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40210 194 / 3e-59 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28130 173 / 9e-51 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G18200 172 / 2e-50 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G15540 170 / 7e-50 EamA-like transporter family (.1) AT3G28100 170 / 1e-49 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G70260 169 / 3e-49 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G75500 166 / 8e-48 WAT1 Walls Are Thin 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G192900 [exp] 511 / 0 AT3G28050 222 / 1e-69 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G145800 [exp] 405 / 9e-142 AT3G28050 283 / 2e-93 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G073200 [exp] 260 / 2e-84 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.001G337100 [exp] 246 / 6e-79 AT3G28050 367 / 4e-126 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G042900 [exp] 183 / 1e-54 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.002G029100 [exp] 182 / 4e-54 AT1G75500 578 / 0.0 Walls Are Thin 1 (.1.2) Potri.005G233600 [exp] 181 / 2e-53 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.002G040200 [exp] 177 / 1e-52 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 177 / 2e-52 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010695 [exp] 360 / 6e-124 AT3G28050 280 / 3e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029180 [exp] 305 / 1e-102 AT3G28050 220 / 2e-69 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039425 [exp] 234 / 2e-74 AT3G28050 453 / 4e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039481 [exp] 233 / 3e-74 AT5G40240 265 / 2e-86 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10039479 [exp] 232 / 2e-73 AT3G28050 457 / 1e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10034877 [exp] 211 / 8e-66 AT5G40230 207 / 3e-64 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039428 [exp] 209 / 4e-65 AT3G28050 343 / 2e-117 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10030842 [exp] 204 / 9e-63 AT3G28050 244 / 1e-78 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039478 [exp] 200 / 7e-61 AT3G28050 385 / 2e-133 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039429 [exp] 196 / 2e-58 AT3G28050 354 / 6e-120 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.001G032100.3 pacid=42787844 polypeptide=Potri.001G032100.3.p locus=Potri.001G032100 ID=Potri.001G032100.3.v4.1 annot-version=v4.1 ATGGCGAGGATAGTTGCAGTCCTGCCAATTGTGGGGATGGTAATGGCAGAGTGTGCACAAGCTGGGCGTATGATATTAGGCAAAGCAGCCATGTCAAATG GCATGAGTAGTTTCGTCTTTGTCCTCTACTCTAATGCCATTGCCTGCCTCATCCTCCTCCCTTCTTCTTTTCTCTTTCACAGATCATCAGAGAGGCCTCC ACTCACCCTGTCAATTGTCTCTGGATTCTTCTTGCTTGGTCTTTTTGGTTGCTTGGGACAGAGCTTTTGTTATGCTGGCATTAACCTCAGCTCTCCTACA CTTGGCACTGCTATGCTAAACCTTGTCCCTGGTCTTACCTTCATACTTGCCATTATTTTCAGGATGGAAAATGTTGACTGGAAAAGTTACAGCACCCTAG CTAAATCTATGGGAACCATAGTATCAATTGGAGGGGCTTTTATTGTTACTTGCTACAAGGGTCCCCTACTTCTGAAGGCACTACCCTCTGTTACAAAGTC ATCTCATCAGGTTCTCTTGCAACAGTCAAATTGGGTTCTTGGAGGATTGCTCATGGCAGTTGACTGTGCCACGGCTTCTTCATGGCTTATAGTACAGGCA TTGATCCTTAAAAAGTACTCAGCAAAGTTGATTGTGGTCTTTTTTCACTTCTTCTTTTCGACCATATTGTCTTCAATAGTTTCTGTGGTCATGGAAAGGG ACCCCTCTGCTTGGAGCTTAAACTCTAATATAAGATTGATTGCTGTTCTCTTCTCGGGAATCTTGGGCAATGCATTCGAAATTGGTGTTACAGCATGGTG TGTACACAAGACAGGTCCTGTGTTTGTTGCTATATTTGCACCCTTGGGGATTGTCATCGCAGCTGCAGCAAGTGTCATCTGCTTTGGGGATGCTCTGGAT CTTGGAATTGTGATTGGAGCTGCTGTAATAGCCATAGGATTTTATGCAGTGATTTGGGGGAAGGCCCAAGAAGAGATCAAGAAAGTTGAAGACAAGGAAA ATTGTGGCTCTGCCTCATCCTCTCAAAAAGTCCCTTTTCTGCAAAATAGAAGCAATGATTATGCGTAG
AA sequence Show only first row Show all	>Potri.001G032100.3 pacid=42787844 polypeptide=Potri.001G032100.3.p locus=Potri.001G032100 ID=Potri.001G032100.3.v4.1 annot-version=v4.1 MARIVAVLPIVGMVMAECAQAGRMILGKAAMSNGMSSFVFVLYSNAIACLILLPSSFLFHRSSERPPLTLSIVSGFFLLGLFGCLGQSFCYAGINLSSPT LGTAMLNLVPGLTFILAIIFRMENVDWKSYSTLAKSMGTIVSIGGAFIVTCYKGPLLLKALPSVTKSSHQVLLQQSNWVLGGLLMAVDCATASSWLIVQA LILKKYSAKLIVVFFHFFFSTILSSIVSVVMERDPSAWSLNSNIRLIAVLFSGILGNAFEIGVTAWCVHKTGPVFVAIFAPLGIVIAAAASVICFGDALD LGIVIGAAVIAIGFYAVIWGKAQEEIKKVEDKENCGSASSSQKVPFLQNRSNDYA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28050			nodulin MtN21 /EamA-like trans...		Potri.001G032100 [exp]	0	1
AT3G01570			Oleosin family protein (.1)		Potri.001G345800 [exp]	5.19	0.7124
					Potri.005G237401 [exp]	6.32	0.7336
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.008G223500 [exp]	10.00	0.6532
AT5G15110			Pectate lyase family protein (...		Potri.008G148800 [exp]	13.07	0.6873
AT1G79680		ATWAKL10	WALL ASSOCIATED KINASE (WAK)-L...		Potri.018G148564 [exp]	14.17	0.6369
					Potri.011G041124 [exp]	17.43	0.7144
AT4G25480	AP2_ERF	CBF3, DREB1A, A...	C-REPEAT BINDING FACTOR 3, de...		Potri.009G147700 [exp]	17.49	0.6529
AT1G50200		ACD, ALATS	Alanyl-tRNA synthetase (.1.2)		Potri.007G070250 [exp]	18.97	0.6787
AT1G21340	DOF	AtDof1,2	Dof-type zinc finger DNA-bindi...		Potri.005G188900 [exp]	19.49	0.7031
AT2G01050			zinc ion binding;nucleic acid ...		Potri.017G002501 [exp]	20.14	0.6970

Compare expression of checked genes

Potri.001G032100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.