Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68620 185 / 7e-56 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 184 / 2e-55 ATCXE17 carboxyesterase 17 (.1) AT5G27320 162 / 3e-47 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT5G06570 161 / 8e-47 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G47480 154 / 2e-44 alpha/beta-Hydrolases superfamily protein (.1) AT2G45610 153 / 1e-43 alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 152 / 4e-43 ATCXE18 carboxyesterase 18 (.1) AT3G63010 151 / 1e-42 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT3G48700 150 / 1e-42 ATCXE13 carboxyesterase 13 (.1) AT3G05120 150 / 2e-42 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G192650 [exp] 645 / 0 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1) Potri.003G192600 [exp] 619 / 0 AT1G68620 173 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G031500 [exp] 397 / 7e-139 AT1G68620 159 / 5e-46 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G113700 [exp] 209 / 7e-65 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.004G101400 [exp] 201 / 8e-62 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.010G127600 [exp] 198 / 8e-61 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1) Potri.016G065000 [exp] 195 / 5e-60 AT5G06570 376 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G155800 [exp] 194 / 2e-59 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G198800 [exp] 191 / 2e-58 AT5G06570 373 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024087 [exp] 469 / 6e-167 AT5G16080 187 / 1e-56 carboxyesterase 17 (.1) Lus10041632 [exp] 430 / 6e-152 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1) Lus10008439 [exp] 199 / 1e-61 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015989 [exp] 197 / 1e-60 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036168 [exp] 194 / 3e-59 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017587 [exp] 192 / 2e-58 AT5G16080 329 / 5e-112 carboxyesterase 17 (.1) Lus10015988 [exp] 187 / 1e-56 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033548 [exp] 186 / 3e-56 AT5G16080 330 / 3e-112 carboxyesterase 17 (.1) Lus10013377 [exp] 180 / 2e-50 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021743 [exp] 170 / 4e-50 AT3G48700 291 / 2e-97 carboxyesterase 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.001G032400.1 pacid=42788108 polypeptide=Potri.001G032400.1.p locus=Potri.001G032400 ID=Potri.001G032400.1.v4.1 annot-version=v4.1 ATGGTCTATCAGAAGAAAATTGTGGAGGAGGTGTCTGGCTGGCTAAGAATCTTCGATGATGGCTGGGTGGACCGGACATGGATCGGACCACCTCAGGTCA AGTTCATGGCAGAGCCAGTGCCTCCCCATGAGGAATTCATAGAGGGTGTCGCCATACGTGATGTGACAATTGATGAAAACTCTGGCCTTAGTGTTAGGAT TTATCTACCCCAACATGAACCTGATCACTATACAGATAATAGCGATAAACTTCCTTTAATTGTCCATTTTCATGGGGGTGGTTTTTGCATTAGCCAAGCT GATTGGTACATGTATTATTACATATACTCTAGGCTTGCTAGGTCAGCTCCGGCAATTGTTGTCTCGGTCTACTTAAGGCTGGCCCCCGAGCATCGCCTCC CAGCTGCAATTGATGATGGGTTCTCTGCCCTAATGTGGCTACGTGCATTAGCACAAGGACAGGAGTCTTATGAGCCATGGCTTAATAATCATGGAGATTT CAACAGGGTTTTTCTAATTGGAGACAGCTCAGGGGGGAACTTGGTGCACCATGTGGCTGCACGTGCTGGTCAAGTGGATTTGAGTCCAATGAGACTTGCT GGAGGCATTCCGGTCCATCCGGGATTTGTACGGTCAGAGAGGAGCAAGTCCGAGATGGAGCAACCAGAGTCACCTTTCTTAACCCTAGACATGGTGGACA GGTTCTTGAAGTTGGCATTGCCAAAAGGGTGCACCAAGGACCACCCTTTTACATGCCCCATGGGGCATGCAGCACCGCCACTGGACAGCCTTAATCTGCC ACCGTTCTTGCTTTGCGTGGCGGAGGCCGACTTGATCAGGGACACTGAGATGGAGTACTATGAGGCCATGAAGAAAGCTAACAAGGATGTGGAGTTGCTA ATTAATCCTGGAGTGGGTCACAGTTTCTATCTTAACAAGATTGCTGTTGACATGGATCCACATACAGCAGCTCAAACTACTGGCCTTTTGGAAGGGATAG TAGAGTTCATCAAGAAGCACTAA
AA sequence Show only first row Show all	>Potri.001G032400.1 pacid=42788108 polypeptide=Potri.001G032400.1.p locus=Potri.001G032400 ID=Potri.001G032400.1.v4.1 annot-version=v4.1 MVYQKKIVEEVSGWLRIFDDGWVDRTWIGPPQVKFMAEPVPPHEEFIEGVAIRDVTIDENSGLSVRIYLPQHEPDHYTDNSDKLPLIVHFHGGGFCISQA DWYMYYYIYSRLARSAPAIVVSVYLRLAPEHRLPAAIDDGFSALMWLRALAQGQESYEPWLNNHGDFNRVFLIGDSSGGNLVHHVAARAGQVDLSPMRLA GGIPVHPGFVRSERSKSEMEQPESPFLTLDMVDRFLKLALPKGCTKDHPFTCPMGHAAPPLDSLNLPPFLLCVAEADLIRDTEMEYYEAMKKANKDVELL INPGVGHSFYLNKIAVDMDPHTAAQTTGLLEGIVEFIKKH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68620			alpha/beta-Hydrolases superfam...		Potri.001G032400 [exp]	0	1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024404 [exp]	2.82	0.9403
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Potri.019G007227 [exp]	5.29	0.9242
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.007G082300 [exp]	6.32	0.9126
AT1G21550			Calcium-binding EF-hand family...		Potri.005G183300 [exp]	7.34	0.9213
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024566 [exp]	10.67	0.9056
AT2G27660			Cysteine/Histidine-rich C1 dom...		Potri.012G038400 [exp]	14.69	0.8896
AT4G37290			unknown protein		Potri.007G049500 [exp]	14.96	0.9005
AT2G24580			FAD-dependent oxidoreductase f...		Potri.018G008700 [exp]	19.36	0.8832
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024632 [exp]	19.62	0.8494
AT1G76650		CML38	calmodulin-like 38 (.1.2.3)		Potri.001G332900 [exp]	21.49	0.8833

Compare expression of checked genes

Potri.001G032400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.