Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75130 83 / 1e-16 CYP721A1 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) AT1G31800 83 / 1e-16 CYP97A3, LUT5 LUTEIN DEFICIENT 5, "cytochrome P450, family 97, subfamily A, polypeptide 3", cytochrome P450, family 97, subfamily A, polypeptide 3 (.1) AT3G14630 82 / 3e-16 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT2G46950 82 / 3e-16 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT4G13310 81 / 4e-16 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) AT4G13290 80 / 1e-15 CYP71A19 "cytochrome P450, family 71, subfamily A, polypeptide 19", cytochrome P450, family 71, subfamily A, polypeptide 19 (.1) AT5G04330 78 / 4e-15 Cytochrome P450 superfamily protein (.1) AT3G14620 78 / 4e-15 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT3G61880 77 / 8e-15 CYP78A9 cytochrome p450 78a9 (.1.2) AT5G24950 76 / 3e-14 CYP71A15 "cytochrome P450, family 71, subfamily A, polypeptide 15", cytochrome P450, family 71, subfamily A, polypeptide 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G192300 [exp] 973 / 0 AT4G13310 79 / 2e-15 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) Potri.006G006200 [exp] 85 / 4e-17 AT4G15110 877 / 0.0 "cytochrome P450, family 97, subfamily B, polypeptide 3", cytochrome P450, family 97, subfamily B, polypeptide 3 (.1) Potri.011G117600 [exp] 82 / 4e-16 AT3G14620 479 / 7e-166 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.018G070900 [exp] 79 / 2e-15 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.008G026200 [exp] 79 / 3e-15 AT5G24910 488 / 8e-169 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.008G026300 [exp] 78 / 4e-15 AT5G24910 486 / 5e-168 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.011G117700 [exp] 77 / 4e-15 AT3G14620 368 / 9e-125 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.004G100400 [exp] 76 / 2e-14 AT5G38450 734 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.011G101500 [exp] 76 / 2e-14 AT3G14690 609 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041637 [exp] 449 / 4e-153 AT1G34540 64 / 1e-10 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) Lus10024083 [exp] 362 / 5e-120 AT4G37410 54 / 1e-07 "cytochrome P450, family 81, subfamily F, polypeptide 4", cytochrome P450, family 81, subfamily F, polypeptide 4 (.1) Lus10033044 [exp] 84 / 6e-17 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10008423 [exp] 83 / 1e-16 AT5G24910 462 / 9e-159 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Lus10025006 [exp] 80 / 1e-16 AT3G14610 228 / 4e-72 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) Lus10028914 [exp] 82 / 3e-16 AT4G12320 461 / 3e-158 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10042487 [exp] 80 / 1e-15 AT3G14690 604 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10026178 [exp] 80 / 2e-15 AT3G14690 607 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10026085 [exp] 79 / 4e-15 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10036817 [exp] 78 / 1e-14 AT2G26710 382 / 3e-121 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.001G032800.1 pacid=42788629 polypeptide=Potri.001G032800.1.p locus=Potri.001G032800 ID=Potri.001G032800.1.v4.1 annot-version=v4.1 ATGAATTCTGTTTTGAACTCAGTTAATGATTTCGTTTCCTCGAAATCGACTAAAGAGTATGCGAAGAAGGAACTCAATGCGATTCTATGGGTTGCGTTGA TTACGATTACTGTTTTCTCGCTTGAAAAGGTTTTTAAGCTCTTTAGATTGTGGTCTAAAGCTAGTCAGATCCCCGGTCCGCCTTGCAACTCCTTTTTCGG ACATGGGAACCTCGGTTCTCGCGAGAATTTCATCGATCTTTTATCGGTGTCGCATGATAAATATGGATCAGTTTTCAAGTTGTGGCTAGGACCAACTCAG CTTTTGGTATCTATAAAAGATCCAGCCCTAATCAAAGAGATGCTTTTGAAGGCTGAAGATAAATTGCCTTTCATTGGGAAGGCATTTCGTTTGGCCTTTG GACGATCAAGTCTCTTCTTCTGTTCGTATGACCAGGCACAAAAGAGAAGAGAATCACTGGCATTGGAATTGAATGGTAAAATGCTTGGAAGAGCAAATGT AATCCCTAAAAATGTTGTGGACTGTATCATGGAAAGAGTAGATGCTATTATGAGCAAAGGAAGTGTTGATTGTAAATCAGTTTCACAGCATATGGCTTTT ACCATTTTGGGGACCGCGCTTTTTGGGGATACATTCCTGGCTTGGTCCAAGGCAACTTTTTATGAGGAGCTTCTGATGATGATTGCTAAAGATGCTTCCT TTTGGGCTTCATATAGAGTTACGCCTTTCTGGAAACGGGGATTTTGGAGGTACCAGTCATTGTGCACAAAGTTGAAATGCTTAACTCTTGACATTGTTCA ACAGTGTGGCAAAAATTATGGACTATTTTCCCATATGGATCAAAACTCTCACATTGGAATAGAAAAGGTTGGAATAAAGGCTGCATCTGGTGCACCACCT TCTAATGGTGTTGAGATGCAAGATAAATTATTCTCACCGGAGCTTGATGGCCATCTTAATGAAAGAGAAGAACCATGTGGAAACATTATGGGTGTGATGT TTCATGGATGCATAGCCACGGCAAGTTTGATTGGTAGTATCCTGGAGAGGCTTGTTACAGATGTGGAGATGCAGGATAAGATATACTCTGAGATAATAAA GGTAAAGCAGGGGTCTGTGAAAGAAGATCAAAATGTTGAGAAGATGCTTTTGTTATTGGCAACTATTTATGAATCAGCCCGTCTTCTGCCAGCAGGACCG TTGCTGCAGAGGTGCTCTTTGAAAGATGATTTGATTTTTAAAAGCGGTGTAGTCATACCAGCTGGAGCAGTACTTGTTGTGCCTGCACAGTTGCTGCAGA TGGATGATTCTAGTTGGGGCAGTGATGCTAGCAAATTTAATCCATATCGATTTTTGTCAAAAGCCGGAAAGGATTCTGATTTGGTGCAGGATACATCATT TACAGAAGAAGCTGTGGATCCAATTCAGTGTTCATTCATTTTGAATGATCCAAATGATAATGCAGCGTTTCTTCCCTTTGGTTCTGGTATGCGGGCCTGT GTGGGTCAGAAATTTGCAATCCATGGAGTTGCCACTTTGTTTGCTTCATTGCTTCAACGTTATGAGGTAAGGCTCGATCCTCAGTTAGCAAACAACCCTA AATCAACAACTGGACCACAGATAGTGTTCGTGAGAAGAAACAGCTGA
AA sequence Show only first row Show all	>Potri.001G032800.1 pacid=42788629 polypeptide=Potri.001G032800.1.p locus=Potri.001G032800 ID=Potri.001G032800.1.v4.1 annot-version=v4.1 MNSVLNSVNDFVSSKSTKEYAKKELNAILWVALITITVFSLEKVFKLFRLWSKASQIPGPPCNSFFGHGNLGSRENFIDLLSVSHDKYGSVFKLWLGPTQ LLVSIKDPALIKEMLLKAEDKLPFIGKAFRLAFGRSSLFFCSYDQAQKRRESLALELNGKMLGRANVIPKNVVDCIMERVDAIMSKGSVDCKSVSQHMAF TILGTALFGDTFLAWSKATFYEELLMMIAKDASFWASYRVTPFWKRGFWRYQSLCTKLKCLTLDIVQQCGKNYGLFSHMDQNSHIGIEKVGIKAASGAPP SNGVEMQDKLFSPELDGHLNEREEPCGNIMGVMFHGCIATASLIGSILERLVTDVEMQDKIYSEIIKVKQGSVKEDQNVEKMLLLLATIYESARLLPAGP LLQRCSLKDDLIFKSGVVIPAGAVLVVPAQLLQMDDSSWGSDASKFNPYRFLSKAGKDSDLVQDTSFTEEAVDPIQCSFILNDPNDNAAFLPFGSGMRAC VGQKFAIHGVATLFASLLQRYEVRLDPQLANNPKSTTGPQIVFVRRNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.001G032800 [exp]	0	1
AT3G23910			unknown protein		Potri.001G317900 [exp]	4.58	0.7129
AT5G59100			Subtilisin-like serine endopep...		Potri.009G037900 [exp]	9.48	0.7282
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Potri.010G159300 [exp]	15.49	0.7277	GRF12.1
AT3G26370			O-fucosyltransferase family pr...		Potri.010G048500 [exp]	23.43	0.6839
AT3G63290			2-oxoglutarate (2OG) and Fe(II...		Potri.002G049300 [exp]	24.37	0.6917
AT1G63110			GPI transamidase subunit PIG-U...		Potri.001G109200 [exp]	25.61	0.7007
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Potri.015G064000 [exp]	27.38	0.6729
AT2G28680			RmlC-like cupins superfamily p...		Potri.008G102900 [exp]	30.74	0.6925
AT1G70330		"ENT1,AT", ENT1...	equilibrative nucleotide trans...		Potri.012G058900 [exp]	31.17	0.6778
AT2G42490			Copper amine oxidase family pr...		Potri.010G045600 [exp]	33.86	0.6306

Compare expression of checked genes

Potri.001G032800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.