Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15780 236 / 1e-65 unknown protein AT2G10440 133 / 4e-32 unknown protein AT1G15770 48 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G012400 [exp] 295 / 1e-85 AT1G15780 557 / 2e-175 unknown protein Potri.001G204900 [exp] 292 / 9e-85 AT1G15780 575 / 0.0 unknown protein Potri.016G028200 [exp] 176 / 1e-45 AT1G15780 252 / 4e-69 unknown protein Potri.006G031200 [exp] 150 / 3e-37 AT1G15780 242 / 1e-65 unknown protein Potri.003G025500 [exp] 45 / 0.0002 AT1G15780 128 / 1e-32 unknown protein Potri.003G028089 [exp] 44 / 0.0004 AT1G15780 223 / 5e-60 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025452 [exp] 264 / 9e-75 AT1G15780 248 / 3e-68 unknown protein Lus10015323 [exp] 263 / 2e-74 AT1G15780 587 / 0.0 unknown protein Lus10025450 [exp] 159 / 1e-42 AT1G15780 454 / 8e-149 unknown protein Lus10026119 [exp] 123 / 8e-32 AT1G15780 128 / 3e-34 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G033400.2 pacid=42792767 polypeptide=Potri.001G033400.2.p locus=Potri.001G033400 ID=Potri.001G033400.2.v4.1 annot-version=v4.1 ATGCTTAGCTTGGCCAACTTACCGTCTACAAGGCCTCCTGACAGAGGTTTAACTCAGGTCCCAAAGTCAAATGTTAGCCTGAATACCAACTTGAAAGATT CACCTGGCGATTTGCAGAAGTCTTCAGAAAATTTAAAAGGTGAAATGGAACATTCTGGTAATTCTGGAAATTGCGAGCAAGAACAGGGAATACTGCATTC ACCACAGGTTATTGCTCAGCATGACCCGGAAGAATTTCTGAATTTTCAGCAAGGCTCCTGCCTAGAGCTTCAATCCTCAACACTTTCCATGGTCAAGAGG GACCCGCAAACAACCCCTGCGCAGCAGCAACAGACACAACAAGCTCCTTCTACACTTCACAGTCCACCATCCATGGTTGAGCAGCCACTATTGTTGTCGC AGCAGCAAGAGCAGCCGAAGGGACAAAAAGCAGTTGCCACTGATATGAGCCAAAAGCTATTAATTGCGCAAGAAAGCAGAGTCCCTGATCAGCAGCATCA TCAACAACCGAAGTTACCATGCCCGTACAATGATTGTCAAAGCTTGCAGTCATATTCACCGACTCCAGAGCAGAAACTGTTGTCTCAATCACAGCCACCA AAATTGCAACAGATTCTAAATTTGTCACGGCAAGATGAACAGCAAGATGACATAAAATCAGAGCAGCATTTGTGTGAATCAAATTCAGAGCGCGAAAATG TAGTGAATCCAATGCAGCAAGTTTCCATGAGGTCTCTACAGCTGCCATTAAGCACTCTTCCACAGCCAAATGATATCAAATTTCTATTAAAAAACAACAG GAATGAACGAGCAAAAGCGAATTCCGGAAGAAGTTCTTCTGTAGCTCAACGTATGGATCCAAAACAAAAGAAGTCCCGGCACCATGTATCCGCACAAAAG AAGAATCAAGAATCTCAACAGGGCCAAATGTGTCAGCAACTTATCAAGGGAAATCAAGAAGTTCCACAGCAGATGCAGCAGGATGATGAAATGCCACATC AGTTGAATGAAGTAAATGATGTGAAAATGACACAAGGAATAGAGCATGAAACAGCACTAAATCAGAGACCTGAAGTCAAGAACTTGAAATTTAGACAAGT GACAGCTGTTAAATCTGGAGTTCCACCTTCAATTTCTTCCCCCATGCACATTCAGACCGAACCTGTCCAGTTACCTCGACATTTTCCTCTGACCAACCAG CATAATATGCTGCGGTCGCATACAATAGTTGGATCCCCTTCTCATTCTGTAAATTCGCAGCCTGGGTTTTCTGCGAAATTCCTCTCCAATGATTCATCAT ACTTGAATACAGATGGCTTTGGTTTTGATGCTTCAACCATCAATTTTGGAGAATCATGTGATGCTGAGAAGCCCATTCTACGCTTAATTAAAGCGGTGAA CTCAATTTCATCGAAAGCATTAAGTGCTTCTGTAAGTGAGATTGGATCAGTAGTCAATCTGGCTGATAGCATGGCAGGATCAGTACCAGTTTATGGATCA AAAGGCTCAGTTAGTGAAGATTTAGGGGTCACGAGTAAGACTAATCCAGTTGCAAGATACTTTTCCATGGGTTGTAGCACATTTGGAATGAGGAAAGTGA AGCTTTCAACCAAAGCAGTTCCCTTGAATGATAAGACACCAGCTTGCCCGAAGAAATCTGGCTCAGAGTCAACTACATTTTGCCCCAACAAAAAACCTAG GATTCAGGTCAGTCGTGCTGTGTTAAAGGAAATAGAGGAGATAAATCAGCAACTGATAGACACAGTGGTAGATATCAGTGATGAAGAAACCGACTCAACT ACAGTTGGACCAGATGGTGGAGGAATCATTATCAAGTGCTCATTCATTGCTGTGTCCATTAGTCCAAACTTCAACTCGAAAGAGGATTTCGAACAAATTT CAAAAATTCAGCCCTTAAAATTGCTTGTCCCCACAAAGTACCCTTATTGCTCACCTATAGTTCTCGAAAAGTTGCCAGAGGAAGTCAGTGAAAAGCATGA TGATCTTTCAGTGAAGGCAAGGGTAAAGCTCAACTTGCATCTCAGAAATCTATTGCAGCCCATGTCAATAGGGGAGATGGCTCGGACTTGGGATAAATGT GCTCGGACAGCTATTTCCGAGCATGCCGTGAAGAATGGGGGAGGTTGCGTTTTCTCAAAATATGGAACTTGGGAAAACTGCTTCAGTGCCGCATGA
AA sequence Show only first row Show all	>Potri.001G033400.2 pacid=42792767 polypeptide=Potri.001G033400.2.p locus=Potri.001G033400 ID=Potri.001G033400.2.v4.1 annot-version=v4.1 MLSLANLPSTRPPDRGLTQVPKSNVSLNTNLKDSPGDLQKSSENLKGEMEHSGNSGNCEQEQGILHSPQVIAQHDPEEFLNFQQGSCLELQSSTLSMVKR DPQTTPAQQQQTQQAPSTLHSPPSMVEQPLLLSQQQEQPKGQKAVATDMSQKLLIAQESRVPDQQHHQQPKLPCPYNDCQSLQSYSPTPEQKLLSQSQPP KLQQILNLSRQDEQQDDIKSEQHLCESNSERENVVNPMQQVSMRSLQLPLSTLPQPNDIKFLLKNNRNERAKANSGRSSSVAQRMDPKQKKSRHHVSAQK KNQESQQGQMCQQLIKGNQEVPQQMQQDDEMPHQLNEVNDVKMTQGIEHETALNQRPEVKNLKFRQVTAVKSGVPPSISSPMHIQTEPVQLPRHFPLTNQ HNMLRSHTIVGSPSHSVNSQPGFSAKFLSNDSSYLNTDGFGFDASTINFGESCDAEKPILRLIKAVNSISSKALSASVSEIGSVVNLADSMAGSVPVYGS KGSVSEDLGVTSKTNPVARYFSMGCSTFGMRKVKLSTKAVPLNDKTPACPKKSGSESTTFCPNKKPRIQVSRAVLKEIEEINQQLIDTVVDISDEETDST TVGPDGGGIIIKCSFIAVSISPNFNSKEDFEQISKIQPLKLLVPTKYPYCSPIVLEKLPEEVSEKHDDLSVKARVKLNLHLRNLLQPMSIGEMARTWDKC ARTAISEHAVKNGGGCVFSKYGTWENCFSAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15780			unknown protein		Potri.001G033400 [exp]	0	1
AT3G18670			Ankyrin repeat family protein ...		Potri.015G118600 [exp]	4.69	0.9643
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.001G369700 [exp]	6.70	0.9476
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.003G057301 [exp]	7.07	0.9525
AT1G54870			NAD(P)-binding Rossmann-fold s...		Potri.010G092400 [exp]	7.93	0.9662
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.013G112100 [exp]	8.48	0.9538
AT5G37690			SGNH hydrolase-type esterase s...		Potri.017G130100 [exp]	10.72	0.9425
AT2G38050		DWF6, DET2, ATD...	DWARF 6, DE-ETIOLATED 2, 3-oxo...		Potri.005G047800 [exp]	14.96	0.9548
AT2G47430		CKI1	CYTOKININ-INDEPENDENT 1, Signa...		Potri.008G191100 [exp]	15.65	0.9359	Pt-CKI1.6
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Potri.007G066700 [exp]	18.33	0.9481
AT4G31980			unknown protein		Potri.003G209832 [exp]	22.02	0.9577

Compare expression of checked genes

Potri.001G033400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.