Plant FIBer expression Database

Potri.001G033500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008697
[exp]
270 / 1e-90 ND /
Lus10026122
[exp]
132 / 3e-38 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF01081 Aldolase KDPG and KHG aldolase
Representative CDS sequence
>Potri.001G033500.3 pacid=42789886 polypeptide=Potri.001G033500.3.p locus=Potri.001G033500 ID=Potri.001G033500.3.v4.1 annot-version=v4.1
ATGGATATGATGGCTACAAGCTGGAGATTAACTCCACAGAGTTTGCCACTATTATCACCAAAAGTCAAAAGCTTCAGGGTTTATAGCTCTTCTTCGTCTT
CGTCACTCTCGCTATCTCCCATAATCCAAAAGACCTCATCTCTGATTCAAAATTCTGGTGTTATTGCTTGCCTTCGCGCCAATAGTGCAGAGCTTGCATA
CGAAGCTGCAACTGCTGCACTGAATGGTGGCATCTCTGTTCTGGAGATTGTGATGTCCACACCAGGTGTGTTTCAGGTTTTAAGGCAGTTGGTGAAGGAC
TATCCTACATTGGCTTTGGGGGTTGGTACTGCTTTAAATGCTGAGGATGCCAGAAACGCAACGAATGCTGGAGCCAAATTCTTCATGAGTCCTGCTACAG
TGAAGGACATTATGGACGATGTTGTGAAGGATGAAATTCTATACATACCTGGTGTAATGACACCCACAGAAATACTGTCTGCATATGATGCCGGTGCTAA
AATGGTCAAGGTTTATCCTGTTTCTGCATTAGGTGGTGTCCAATATATATCAGCACTCAAGAAGCCTTTCCCTCACATACCAATGGTTGCTTCTCAGGGC
ATCAAGATAGATTCTATAGGGGAGTATATATCTTCTGGAGCATCATCCGTTGTTTTATCAGATGCCATTTTTGATAAAGGGGCGATGACCCAGAGAAATT
TCAATGTAATACATCAACTTGCAAGCCTTGCTGCTTTGGAGGGAAAAGAAGCTGTTGAACGAAAAAGAAGTTGCACCACAAATTAA
AA sequence
>Potri.001G033500.3 pacid=42789886 polypeptide=Potri.001G033500.3.p locus=Potri.001G033500 ID=Potri.001G033500.3.v4.1 annot-version=v4.1
MDMMATSWRLTPQSLPLLSPKVKSFRVYSSSSSSSLSLSPIIQKTSSLIQNSGVIACLRANSAELAYEAATAALNGGISVLEIVMSTPGVFQVLRQLVKD
YPTLALGVGTALNAEDARNATNAGAKFFMSPATVKDIMDDVVKDEILYIPGVMTPTEILSAYDAGAKMVKVYPVSALGGVQYISALKKPFPHIPMVASQG
IKIDSIGEYISSGASSVVLSDAIFDKGAMTQRNFNVIHQLASLAALEGKEAVERKRSCTTN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G033500
[exp]
0 1
AT5G40160 EMB139, EMB506 embryo defective 506, EMBRYO D... Potri.001G295200
[exp]
2.00 0.9411
AT1G27510 Protein of unknown function (D... Potri.015G075000
[exp]
5.38 0.9473
AT2G35130 Tetratricopeptide repeat (TPR)... Potri.012G123600
[exp]
5.47 0.9445
Potri.001G341700
[exp]
10.24 0.9208
AT1G51550 Kelch repeat-containing F-box ... Potri.010G252200
[exp]
11.22 0.9317
AT4G29750 CRS1 / YhbY (CRM) domain-conta... Potri.006G148901
[exp]
12.60 0.9416
Potri.002G115600
[exp]
14.96 0.9012
AT3G26740 CCL CCR-like (.1) Potri.014G145500
[exp]
21.63 0.8803
AT1G80480 PTAC17 plastid transcriptionally acti... Potri.001G201400
[exp]
21.81 0.9128
AT2G21710 EMB2219 embryo defective 2219, Mitocho... Potri.009G116200
[exp]
23.36 0.9251

Potri.001G033500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.