Plant FIBer expression Database

Potri.001G033600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26920 267 / 2e-80 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
AT5G12120 259 / 1e-77 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G191600
[exp]
831 / 0 AT2G26920 275 / 3e-83 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Potri.009G021900
[exp]
416 / 6e-137 AT2G26920 412 / 3e-135 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Potri.001G225200
[exp]
387 / 3e-126 AT2G26920 424 / 1e-140 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026781
[exp]
398 / 7e-130 AT2G26920 468 / 3e-157 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Lus10036096
[exp]
369 / 1e-118 AT2G26920 473 / 6e-159 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Lus10024080
[exp]
194 / 2e-54 AT2G26920 181 / 3e-50 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Lus10041640
[exp]
189 / 1e-52 AT2G26920 179 / 3e-49 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
PFAM info
Representative CDS sequence
>Potri.001G033600.2 pacid=42787772 polypeptide=Potri.001G033600.2.p locus=Potri.001G033600 ID=Potri.001G033600.2.v4.1 annot-version=v4.1
ATGTCTCCTGCATCAAAATCCAAGACCAAGTCCAAGGATAAGACCTTTGTAAAGTCTGCTAAAGAACAACAGAAGGCATCTATTAAGCCTTCTGGATCAA
CCAACACTGTAAGTGGGAGTCCAGTGAATGCTTATAATCCAATCTCTGGGACTTTTCATGCACTAGAAATACCATCAGCTGCTGCTTTCCCACCCCCAGC
TGCTGCTTTCCCACCCCTCCATGACAATGGTCGATTCAGAAATATAGATGACCCAGACGAGCATTCTAGTAGCCCACGTGGAACACTTTCAGAGTATGAT
TCAGTTTCCAACAATGGGAGCTGCTCTGGTGAGTCAGAAGACATAAAAGAGAGAGCCAATTCTACTCGGCAAGAAACAGTACCTGGTTTAGACAGTGACA
AACGTGAGAAGATCCGCCTGAAGAATGAGAAAAAGCACCAGCGTCAGAGAGAGAAGAGGGCGCAAGAGTTGCATGAGCGTTGCATTGCGTATCTAAGGTC
AAGAAAACTAGAAAGACTTTCAGAACAGCTTGTGGCAATGGGTTTTTCTCATGAGCGGGCAACCCTGGCCCTTATGTTGAATGAGGGCAGGGTGGAAGAA
TCAGTAAACTGGCTTTTTGAGGGAAGTGAAGAGGAAGCTCAAAGTAAGGACTCTGAGCTTGGAAGTGGTGGTAACCTAAATATTGATATAAGTGAGGAGC
TTGCTCAAATCTCAGCATTGGAGATGAGATACAAATGCTCAAAGCAGGAGGTTGAAAGAGCTGTGGTTGCTTGTGAAGGGGATCTAGTGAAGGCAGAAGA
GACCTTGCATGCACAAAAGCAGGAACTACCTACGACTCCACCAAGACCAGAATATACTGTTGACACCAATAACCTGAGGAGACTGCATGAAAAGCCTGTA
CCTGTACCTGTACCTGTACCTGTACCTGTACCTGCAGCTTCAGTTATAGCACAACAGAGAATGAACGAACCGGATTTCAACTACAAAACAGCAATTCCAG
CGCCAACATATTCAGAACCTGGGAGTAGAAACTTACAACCTCTGAATCAGCCCAAGTCACTAGCAGACAAGAGGTGGGGCACAACAGGATCAAGCCCTGC
CTTTCCATCATCTACGGTACCATCCATGCAAGTAGCACCTCCATCAACAAAATTTGATGTCAGGCTTGGTTTTGCTGGAAATGAGGGGAAAAAATTGCAG
CAGATAGTGAGGGAACCAGTAATAATGATGCAGCGCCCTCAATCTATAAATGCCAAACAAAATACAGTCCCTAGTGCAAGCACCACACCTGTAACATCTG
GATGGTATTCAAATAATGTTTCAGGTGTGGAAAATATGCGGCCAAATGTTAAGTTGCTTCCAAATCAGAGCACTGGAAACTTTGGTCTTGTAAATCAGAG
CTCAGAACAATTTTACAATCCAGTGTCACGTAAAGAAAATTCATTCCTCTTTAGTGGCCCAGCTACATCAAATAGACAGGGAGGTACAAGATCTCCTTCA
TTTACAGTTCCATCTCAGTTGCAAGGTTCATATGGTAAAACAACTGCGTCTTTGCCTTCACTAGCAGCACCATCCTCACTTGGTTTATTCACTGGTTGGG
GCGCAGCAGGAACTTTAGGATCTCCACATGTTGATTGGGATACAGGAAGCTTGATGCCAGAATTTGATTACACCAGTATCGATTGGACTTTGGATTCAAA
CCTGTTATCCTCCAAGTCAAATGGGTTGTGGTTGGGTCTCTCCTCATTGCTGAGGAACACATCTATAACAAGAACTAGCGGTACAAATAGTTCCTTCCTG
TCAGGGTTACGGGACAGTGGAATGGCTAAAGAAACATCATCCTCAGCTGGCTCGAGCGAGTGGACCTCTCCTTTCGCAGGAAAGGACATGTTTAGTTTGC
CGAGGCAGTTTGTAACTTCTCCGTCTCCTTACGACTAG
AA sequence
>Potri.001G033600.2 pacid=42787772 polypeptide=Potri.001G033600.2.p locus=Potri.001G033600 ID=Potri.001G033600.2.v4.1 annot-version=v4.1
MSPASKSKTKSKDKTFVKSAKEQQKASIKPSGSTNTVSGSPVNAYNPISGTFHALEIPSAAAFPPPAAAFPPLHDNGRFRNIDDPDEHSSSPRGTLSEYD
SVSNNGSCSGESEDIKERANSTRQETVPGLDSDKREKIRLKNEKKHQRQREKRAQELHERCIAYLRSRKLERLSEQLVAMGFSHERATLALMLNEGRVEE
SVNWLFEGSEEEAQSKDSELGSGGNLNIDISEELAQISALEMRYKCSKQEVERAVVACEGDLVKAEETLHAQKQELPTTPPRPEYTVDTNNLRRLHEKPV
PVPVPVPVPVPAASVIAQQRMNEPDFNYKTAIPAPTYSEPGSRNLQPLNQPKSLADKRWGTTGSSPAFPSSTVPSMQVAPPSTKFDVRLGFAGNEGKKLQ
QIVREPVIMMQRPQSINAKQNTVPSASTTPVTSGWYSNNVSGVENMRPNVKLLPNQSTGNFGLVNQSSEQFYNPVSRKENSFLFSGPATSNRQGGTRSPS
FTVPSQLQGSYGKTTASLPSLAAPSSLGLFTGWGAAGTLGSPHVDWDTGSLMPEFDYTSIDWTLDSNLLSSKSNGLWLGLSSLLRNTSITRTSGTNSSFL
SGLRDSGMAKETSSSAGSSEWTSPFAGKDMFSLPRQFVTSPSPYD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G26920 Ubiquitin-associated/translati... Potri.001G033600
[exp]
0 1
AT5G55260 EP128, PPX-2, P... PROTEIN PHOSPHATASE X -2, prot... Potri.011G092200
[exp]
6.63 0.7202 Pt-PPX1.2
AT3G49880 glycosyl hydrolase family prot... Potri.005G148800
[exp]
19.74 0.7128
AT3G25230 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rota... Potri.002G248300
[exp]
22.04 0.7563
AT4G02450 HSP20-like chaperones superfam... Potri.005G199700
[exp]
24.37 0.7541
AT1G14360 ATUTR3, UTR3 UDP-galactose transporter 3 (.... Potri.016G139100
[exp]
25.21 0.7386
AT3G12580 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN... Potri.010G206600
[exp]
29.73 0.7474
AT3G59280 TXR1 THAXTOMIN A RESISTANT 1, Prote... Potri.014G151200
[exp]
45.39 0.7204 TXR1.1
AT4G38620 MYB AtMYB4 myb domain protein 4 (.1) Potri.009G134000
[exp]
56.00 0.6214 MYB.48,MYB156
AT5G54940 Translation initiation factor ... Potri.010G151700
[exp]
66.63 0.6418
AT3G63030 MBD4 methyl-CPG-binding domain 4 (.... Potri.002G212600
[exp]
72.15 0.6878 MBD911

Potri.001G033600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.