Plant FIBer expression Database

Potri.001G033900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43190 251 / 8e-83 ribonuclease P family protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019913
[exp]
282 / 2e-93 AT2G43190 221 / 9e-70 ribonuclease P family protein (.1.2.3.4)
Lus10026483
[exp]
264 / 4e-88 AT2G43190 180 / 3e-55 ribonuclease P family protein (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0639 Rof PF01868 UPF0086 Domain of unknown function UPF0086
Representative CDS sequence
>Potri.001G033900.4 pacid=42787892 polypeptide=Potri.001G033900.4.p locus=Potri.001G033900 ID=Potri.001G033900.4.v4.1 annot-version=v4.1
ATGGCGACGGATCAAAGGAAAAGGACAATGGATGCATTGGAGAGAAGGTTTGCTGTTGCAAAAGCTGAGTTGGTTCAACAACAGCAAAAGAAACACAAAG
TAACACATCATGAGGGACATAGGAAAGAAAATAACAATGCAGCCTCTACTTCATTGCATCGAGCGGATGCACCGAAGACTCCTTCCAGTAGCTTGTCGAA
GAAAGGGAGTTCTTTTTTCTTCGGCTACACTCCATCTCAAGATCCAGAAGAAAATGGCTTAGCATATTCACAGCTCCCCCAAGCTGCACACGAAAACCTG
TTGACGACTGGCGTCAAGTTCGAGAGTAAAAAGGGGAGTGTGGTCGACAAGATTTTGCACGAGCTTTTTCAGCACGGTGATGCTTCTCAGAAGTACATGC
AGGGATCCAGAAACATAAAGATTGATAACTGGATCCTTCTTGATAATTATGTACCAAGCAAATCTACTGGTTCTCAGACTAGAGCTTCACAATCCAACCC
AAAGCATTCGAGAAGGCACATGTCTATGAAGCAACATAAAAAACTTGGGATGTTTAATTTGCCTCAAGATCTCCAAAAATTTGATGTTTATAAGCCAATG
CATGAGATATGGAAAGACTATATGATGCAGCTTCTCAAGAAAACTGGGAGGAACGAGTTGCCCAAATGTCTTCTGAGTGCAGATCTACATGGCGCTGCTA
TTCTAGTTGCTGACTGTAAGATAAAATCATTCACTGGAATTAGTGGTATTATGATTCGTGAAACTGCAGAAACATTTGGGATAATCACACAAGACAGCAA
ATTGAAAGTTGTGCCCAAAAAGTTGTCCGTTTTTATATTTCAAATTGATTGCTGGAAGATCACAATGCTTGGGGACAAGCTCTCTTCAAGAAACTCAGGC
TTGTGA
AA sequence
>Potri.001G033900.4 pacid=42787892 polypeptide=Potri.001G033900.4.p locus=Potri.001G033900 ID=Potri.001G033900.4.v4.1 annot-version=v4.1
MATDQRKRTMDALERRFAVAKAELVQQQQKKHKVTHHEGHRKENNNAASTSLHRADAPKTPSSSLSKKGSSFFFGYTPSQDPEENGLAYSQLPQAAHENL
LTTGVKFESKKGSVVDKILHELFQHGDASQKYMQGSRNIKIDNWILLDNYVPSKSTGSQTRASQSNPKHSRRHMSMKQHKKLGMFNLPQDLQKFDVYKPM
HEIWKDYMMQLLKKTGRNELPKCLLSADLHGAAILVADCKIKSFTGISGIMIRETAETFGIITQDSKLKVVPKKLSVFIFQIDCWKITMLGDKLSSRNSG
L

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G43190 ribonuclease P family protein ... Potri.001G033900
[exp]
0 1
AT5G66810 unknown protein Potri.005G137100
[exp]
1.41 0.8404
AT2G33610 CHB2, ATSWI3B CHROMATIN REMODELING COMPLEX S... Potri.002G004800
[exp]
2.64 0.7675 (),CHB903,Pt-SWI3.1,of
AT2G27460 sec23/sec24 transport family p... Potri.009G163300
[exp]
4.00 0.7882
AT5G02320 MYB MYB3R-5, ATMYB3... ARABIDOPSIS THALIANA MYB DOMAI... Potri.006G085600
[exp]
4.24 0.7752 MYB211,Pt-MYB3.1
AT4G34370 ATARI1 ARABIDOPSIS ARIADNE 1, ARIADNE... Potri.009G111200
[exp]
5.47 0.7552
AT1G10790 unknown protein Potri.001G210600
[exp]
7.34 0.7941
AT5G52880 F-box family protein (.1) Potri.012G035500
[exp]
17.94 0.7226
Potri.017G061501
[exp]
19.13 0.6810
AT2G20280 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.016G084100
[exp]
24.37 0.7559
AT5G07610 F-box family protein (.1) Potri.008G016150
[exp]
24.37 0.7513

Potri.001G033900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.