Plant FIBer expression Database

Potri.001G034200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13860 456 / 2e-160 ELC-LIKE, ATELC-LIKE ELCH-like (.1)
AT3G12400 451 / 3e-158 ELC, ATELC Ubiquitin-conjugating enzyme/RWD-like protein (.1)
AT2G38830 160 / 1e-45 Ubiquitin-conjugating enzyme/RWD-like protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G191100
[exp]
584 / 0 AT3G12400 419 / 1e-145 Ubiquitin-conjugating enzyme/RWD-like protein (.1)
Potri.002G046200
[exp]
194 / 1e-58 AT2G38830 280 / 9e-93 Ubiquitin-conjugating enzyme/RWD-like protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024108
[exp]
528 / 0 AT5G13860 502 / 6e-177 ELCH-like (.1)
Lus10041612
[exp]
523 / 0 AT5G13860 499 / 1e-176 ELCH-like (.1)
Lus10008690
[exp]
499 / 6e-177 AT3G12400 482 / 4e-170 Ubiquitin-conjugating enzyme/RWD-like protein (.1)
Lus10026129
[exp]
495 / 4e-175 AT5G13860 485 / 2e-171 ELCH-like (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0208 UBC PF05743 UEV UEV domain
CL0596 VPS23_C PF09454 Vps23_core Vps23 core domain
Representative CDS sequence
>Potri.001G034200.1 pacid=42793397 polypeptide=Potri.001G034200.1.p locus=Potri.001G034200 ID=Potri.001G034200.1.v4.1 annot-version=v4.1
ATGGTTCCTCCACCACCAAACCACCAAGCAATCCAACAATTCCTCTCCTCCGTCCTCTCCCAACGCGGCCCTTCCGCCCTCCCTTACACGGAAGACACCA
AATGGCTCATCCGTCAACACCTCGTCTCCCTGACCTCCACTTTCCCTTCCCTCGAACCCAAAACTGCTACCTTCACTCACAACGACGGCCGCACCGTCAA
TCTTCTCCAAGCAGACGGCACCGTTCCTATGACTTTCGAATCTGTCACTTATAACATCCCTGTTATTATCTGGCTTATCGAATCTTACCCTCGTCACCCT
CCTTGTGTTTACGTCAATCCCACGCGCGACATGGTCATCAAAAGATCCCATTCTTTTGTTAATCCATCGGGCCTCGTTGCGGTCCCTTATTTGCAGAATT
GGATCTACCCCAGTTCTAATTTGGTTGATTTGGCTCGCGAATTGAGCATGATTTTTGGGAGGGATCCTCCTCTTTTTTCTCAGCGTCCTCGCCCTAGCCC
CAATCCCAGTTATCATCCGAATCAATCGAGTTTGACGAACTCGTCGACTTTTGGATCAGTGGGAAGTGGGTATCCGAGGCAGATGGTCAGGCCACCACAG
TATCCACCACCGTCGCCTCCGTACGGTGGTGGGGAGGGGAAGGCGGGAACGGAGGACGCGGCGGAGGTTTTTAAAAGGAATGTGATTAATAAGCTTGTGG
AGAATGTTCATGGGGACATGTTGCTGCTGAGGAAAACGAGGGAGTCGGAGATGGAAAACTTGTTCAGCGCTCAAGCTGTGTTGAGGAGGAGAGAGGAGGA
GATTAATAAAGGGTTGAAAGAAATGAGAGATGAAATGGAAGGGTTGGAGTCGCAATTGCAAGTTGTTTTGATGAATACGGATGTTTTGGAGGCGTGGGTT
AGGCAAAACGAGGGGAAGGTGAAAGGGGGTATGGAGGACATTGATGTGGATAAGGCTTTTGAGTGTGTGGATGTTTTGTCGAAGCAGATGTTGGAGTGTA
CGGCAGCGGATATGGCGATTGAGGATGTGGTTTATTCGTTAGATAAAGCGGTGCAAGAAGGGGCAATGCCGTTTGTTCAATATTTGAGGAACGTGAGGTT
GCTGTCTAGAGAGCAGTTTTTTAACAGAGCTACCGCAGCGAAAGTTAGGGCTGCACAAATGCAGGCTCAGGTTGCTAGTATGGCTGCTAGGGCACCACGT
TATGCTAGCTGA
AA sequence
>Potri.001G034200.1 pacid=42793397 polypeptide=Potri.001G034200.1.p locus=Potri.001G034200 ID=Potri.001G034200.1.v4.1 annot-version=v4.1
MVPPPPNHQAIQQFLSSVLSQRGPSALPYTEDTKWLIRQHLVSLTSTFPSLEPKTATFTHNDGRTVNLLQADGTVPMTFESVTYNIPVIIWLIESYPRHP
PCVYVNPTRDMVIKRSHSFVNPSGLVAVPYLQNWIYPSSNLVDLARELSMIFGRDPPLFSQRPRPSPNPSYHPNQSSLTNSSTFGSVGSGYPRQMVRPPQ
YPPPSPPYGGGEGKAGTEDAAEVFKRNVINKLVENVHGDMLLLRKTRESEMENLFSAQAVLRRREEEINKGLKEMRDEMEGLESQLQVVLMNTDVLEAWV
RQNEGKVKGGMEDIDVDKAFECVDVLSKQMLECTAADMAIEDVVYSLDKAVQEGAMPFVQYLRNVRLLSREQFFNRATAAKVRAAQMQAQVASMAARAPR
YAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G13860 ELC-LIKE, ATELC... ELCH-like (.1) Potri.001G034200
[exp]
0 1
AT3G01050 MUB1 membrane-anchored ubiquitin-fo... Potri.004G124600
[exp]
1.00 0.8532
Potri.019G015800
[exp]
8.83 0.8313
AT2G28330 unknown protein Potri.016G142100
[exp]
14.14 0.7972
AT2G01290 RPI2 ribose-5-phosphate isomerase 2... Potri.008G127600
[exp]
15.23 0.8166
AT1G76250 unknown protein Potri.002G011400
[exp]
19.59 0.8171
AT1G07310 Calcium-dependent lipid-bindin... Potri.008G064900
[exp]
27.11 0.7898
AT3G21220 ATMAP2K_ALPHA, ... ARABIDOPSIS THALIANA MITOGEN-A... Potri.008G009800
[exp]
27.92 0.7945 MKK4.2
AT5G36930 Disease resistance protein (TI... Potri.017G105501
[exp]
34.38 0.8146
Potri.017G111050
[exp]
34.98 0.8088
AT5G24520 ATTTG1, URM23, ... UNARMED 23, TRANSPARENT TESTA ... Potri.012G006100
[exp]
37.41 0.7614 TTG1.2

Potri.001G034200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.