Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65440 1251 / 0 GTB1 global transcription factor group B1 (.1.2.3) AT1G63210 1087 / 0 Transcription elongation factor Spt6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G029200 [exp] 1306 / 0 AT1G65440 1961 / 0.0 global transcription factor group B1 (.1.2.3) Potri.006G031900 [exp] 1298 / 0 AT1G65440 1982 / 0.0 global transcription factor group B1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011344 [exp] 1292 / 0 AT1G65440 1946 / 0.0 global transcription factor group B1 (.1.2.3) Lus10003130 [exp] 1275 / 0 AT1G65440 1938 / 0.0 global transcription factor group B1 (.1.2.3) Lus10029079 [exp] 961 / 0 AT1G65440 1451 / 0.0 global transcription factor group B1 (.1.2.3) Lus10029085 [exp] 540 / 5e-174 AT1G65440 761 / 0.0 global transcription factor group B1 (.1.2.3) Lus10034231 [exp] 319 / 1e-93 AT1G65440 426 / 2e-133 global transcription factor group B1 (.1.2.3) Lus10029034 [exp] 288 / 3e-87 AT1G65440 404 / 2e-130 global transcription factor group B1 (.1.2.3) Lus10013071 [exp] 204 / 2e-54 AT1G65440 275 / 7e-79 global transcription factor group B1 (.1.2.3) Lus10029078 [exp] 108 / 4e-27 AT1G65440 150 / 5e-43 global transcription factor group B1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF00575 [poplar] [flax] S1 S1 RNA binding domain CL0021 [poplar] [flax] PF14632 [poplar] [flax] SPT6_acidic Acidic N-terminal SPT6 CL0541 [poplar] [flax] SH2-like PF14633 [poplar] [flax] SH2_2 SH2 domain CL0198 [poplar] [flax] HHH PF14635 [poplar] [flax] HHH_7 Helix-hairpin-helix motif CL0580 [poplar] [flax] YqgF PF14639 [poplar] [flax] YqgF Holliday-junction resolvase-like of SPT6 CL0580 [poplar] [flax] PF14641 [poplar] [flax] HTH_44 Helix-turn-helix DNA-binding domain of SPT6
Representative CDS sequence Show only first row Show all	>Potri.001G034300.1 pacid=42791805 polypeptide=Potri.001G034300.1.p locus=Potri.001G034300 ID=Potri.001G034300.1.v4.1 annot-version=v4.1 ATGAAGAAGGCAAAGAGAAAATTGCCCTTCACTTTAGTCGATGAAGATGATGAAGAGGAAGAAGTGGCAGTTAAGGAGAAAAGGGCCCAAAATGTTAGTG TAGACGATGATGAAGATGGTTTGGATAAGTTTGAGACTGATGGGTTTATAGTGGATTATAACGAGGAAGAAGTGGAAGGTGACTGTGATGGGAAAGATGA GCAAATGAAGAAGAAAATGAGGAAGAAGAAATCTTCAAAGAATCTTGTCCTTGATGATGATGATCTTGAGTTGCTCCGAGAAAATCAAAAGCCAGGCCTG TTCCAAACAAAGAGAGTTGGAAATAAAAAATTTAAACGGCTCAAAAAGGCCAAGGGCTGTGCTCTGGGAAAAGACTCTGGATTGTCTGATGATGATGTAT CATTATACGATGATAGTGCTGAAGAAAAGGAAGCTATGTATGATGATGACATAAATGACATGACAGATTTTATTGTAGACGATGATGAAAGATACGAGAA AAGAGCCCCCATGAGGTTGTGGGAGCTGAAAGAAAAGAAGTCAAGGCCAGTAACAATGGCTTCTTCTTCTTCCCTAGAGGAAGCTGGCTACGTATTTGGT GATGCCGATGAACTCCTTAAGCGTCAAGTTCTGGTTAAGATTGTCAAGCCAGATGATTATGACAACTTTGAGCTGGATCATTTTATGGCTGAGAGGGATG ATCATGTGAAGAAGACTGATTTACCCGAGAGGATGCAGGTGATGTCAGAGGAAATCACTTGCACTGCTTTAGTTGGCGAAACAAGAAGACAAGAGGAGAG TTCTTGGATACTTAATCAGCTTATCACAGACATGTATCCATTGTTGTGTAAGAAAAAAGCTCAGGAAGGAAATGGAGTAGGTCTGCTTAAGAAGATTAAC AAGGAAGATATAGTGAGGTTCTTGGAAATGCATGATTTGGAAAAGTATGATATTCCATTTATTGCTATGTATCGAAAAGAGAAATGCCTTAGTATGTTGG AAGATCTGGGGGAAGATGGTATACAAAACGAATGTAGCAATGACACAGAGGGAAAACCTAGACTGAAGTGGCATAAGATTCTCTGGGCCATCAATGAACT GGACAGAAAGTGGTTGCTTCTCCAGAAAAGAAAGATCATGCTTGAAGAATCCTATAAGAAGCGTTATGAAGAGGAATGCAATAATATTGATGACATGGCA AGACTTTCTTTGATCAATCTGCACTTTGACACAATCATGAAGTCTCTGATGCTGGCTGAAACAGAGAAGGATATTGATGATGTCAGTATGAAGTTTAGCT TGCATTTTCCTCCAACTGAAGAGGTCATGGAAGGAAAATTTAAGAGACGAGAGAGGAGGTCGGCATACAGTGACTACATTAAGGCTGGTTTGTGGGAGCT TGCAGTAAAGTTTGTCTACAGCTCCAAGCAATTCTGCCAGCATCTCCGTCAAGCGAAAATGGGAATGGATTTTTGGGAGGATCTTAATGAATCTCCCGAG GTGATAGCTTCGAAGTTTACATGTGCAAGTTTAGAAACTCCAGAAGCAGTGCTTAAAGGAGCCAGGCACATCGCTGCTCTGGAGATTAGCTGTGAGCCTT CTGTCAGGAAACATGCCCGGGGATTTTTTACTGACGAAGCTCTAGTCTCAACCAGACCAACTCCCAAAGGAGCCAAGGAGATTGATTTCTGCCATCAGTT TTCATCTGTTAAGTGGCTACGTGATAAGCCCCTTGGTAAATTTCAGGATGCACAGTGGCTTCGTATTCAGAAAGCTGAAGAAGAGAAGCTCCTTGAAGTA ACCATAAGATTGCCTGAAGATTCTCTGAATAAGTTGATTAGTTACTCTCACAAAATATATCTTGTGGGAGGTGATGATGGGTATACCCAACTCTGGGATG AACAACGAAAGTTAATACTTCAGGATGTGTTTTCAAATTGTCTCCTTCCTTCATTGGAGAAGGAAACTCGTGTCTTGTTGACCACAAGAGCAAAATGTTT GGTGCTTATGGAATATGGAGAGCAGTTATGGAACAGGGCATCTGTTGCCCCATATCCACACAAGCGGAATGTTGCTGGCCTGGAGGAAGGTACTGGACCA AGGGTCATGGCTTGCTGCTGGGGTCCTGGAAAGCCACCAACTACGTTTGTAATGTTAGATTCATGTGGGCAATTGCTTGATGTGTTGCAATCTGGATCCA TTAGTCTGCGGTCTCAGAATGTTACTGGCCTACAACGGAAGAAATATGATCAACTACGTGTCCATAAGTTTATTATAAGTCATCAGCCCGATGTTATTGT CCTCGGTGCAGCAAATGCGTCCTGTCCACGGTTGAAGGATGATATCAAAGAGATTGTTTTGAAGATAGAGGAAAGTTCTATAGATGCTGACCAAGTGCTA AATGGGATTGGTGTTATTTATGGAGATGAAACCTTGCCCCAGCTTTATGAAAAATCAGAAGTTTCATTGCGCCATTTGCCTGGACAAGAAGGCATTGTCA AACGAGCTGTGGCTCTGGGGCGGTACCTGCAAAATCCATTGGCTATGATTGCTACACTGTGTGGTGTCCAGAAAGAGATTGTTTCTTGGAAGCTTACCTC CTTAGACCACTTTCTAACACCTGAAGAGAAGTATGGGATGATTGAAATGCTGATGGTGGATATTACCAATCAGGTTGGTGTGGACATAAATGCTGCTGTA AGCCAAGATTGGCTCTCTGCTCCTCTTCAGTTTGTATCTGGGCTTGGGTCTCAGAAGGCAGCCTTTCTACAGAGGGAGTTGGCTGCTGGTAAAATAGTTA ATAATCGAAAAGAGTTGGCAATTTGTGGATTGACAGAAAAGAAAATTTTCTTTAATGCAGTTGGCTTTTTGCGTGTCTGTTGTGGGGAAATTCTCTCTTT TGGATGTGAATATGATATGTTGGATGGAACAAGAATTCATCCTGAATCATATGGTCTTGCAGAGAAATTGGTTAAGGATGTCTATGATGATGTTGCTGAG GCACATCCCTTAAAACATGTTAGGAACAATCCACAGCTGCTGAAAGATTTTGATATTAATGCTTACGCTGATAATTTTGAAATAGAGCAAGGAGAAAATA AGAAACTGACTCTTTATGACATTAAAACTGAACTTTTGCATGGATTTCTTGACCCTCGTCGTCCATACGAAGAACCTACTCAGGATGAGGAATTCTGTTT GATATCAGGCAAAGATGAGGATGCATTTGCTGAAGGAAGAATTGTACAGGCTATTGTTTGCAGAGTTCTGTCACAACGAGCATTTTGTGCACTTGACTCT GGCTTGATTGGCATGATCACGAAGGATGATTATTCAGATGAGGCTGCTGATTATTCCTTGACAAAGAGGCTACGAGAAGGTGATATTCTTACCTGTAAGA TAAAACAAATTGACAAGAGCAGACACCAGGTGCTTTTAACTTGTAAAGAAAGTGAACTGAAGAGTTCAAGAGACCAGAACTTGCATGAGCTTGAACCTTA TTATTGTGAAGGTCAGAGCAGTTTAGTAAGTCATCAGGAGATAGCCTGCAAGGAAGACCTCAAAAATAAACATTTCATTTCAAGGATGATTATTCATCCT CATTATGAAAATATGACGCAGAATCAGGCAGTGGAGTTCCTGGCAGACAAGGATGTTGGTGAGCGTGTTTTTCGTCCAAGTTCAAGGGGACTGCATTATT TGATTCTAACCGTGAAAGTCTTTAATGGACTTTATGTTCACAAAGACATAATCGAAGATGGGAAGAACCTCAAAGACTTCTCAAGCATGCTTGATCTTGG GAAAACATTAAAGATTGGAGATGACATTTATAAGGATTTAGATGAGGTTATTAGTCAATATGTTGACCCATTGGTGACCCACCTGAAAGCAATTCTAAGT TTCCGAAAATTTAAGAAGGGCTCAAAAGCAGAGGTTGATGAGCTCTTAAAATCTGAGAAATCAGATTATCCAATGAGGATACCTTACTGCTTTGGCGTTT CGTATGAGCATCCTGGAACTTTCATCTTGTTTTACATAAGAACAAATCTACATCATGAGTATATAGGTCTGCATCCTAAGGGATTCAAATTTAGGAAGCA GACATTCAGGAAGGTTGAGCAGCTCGTTGCATATTTCCAGAAACATATTGATGATCTAAAGCATCAGCCAGCACAGATGACAAGACCCATTACTGGTTCT TCTGCTAGAGCATCCACAGAGTGCGGTAATGAAGGTGGTTGGAAAGGCCAGCTAAACTCAAGCAAAGATGAACTGTCAACACTTGTCTCTGCAGGCAAGA AAGATTGTACTAGAGATGATGGTGGCACAGGTGGTCATGGTAGTGGTCGAGGACGTGGACATCCTAGTGGGTTACCTCGGCCTAATTGTGTTTATGGACA TGGAAACAGAGGTGGCTTTGGTAATGGAAGGGGTGGTAACAACCGCAATGGAAGTGACTCTGGAAACAATACCTCTTACTGGCATGATAGTGGTGGAAAT TCAGGTGCTGGCTCTAGCTACAGTTGGGGCAACAATACCGGTGGAAATGCTAGCAGTTGGGGAAACAATGCTGGTGGAAATGGTAGCAGTTCCAGTTGGG GTGGCAGTGGGCATCCTGTGAATGCTGGTGGTCGCAATTCGGGTGGAAGCGGTGATGATTGTCAAGGGATCCCTGGAAGTGGTCCTCCAAATGGTAGTGA TTGGATGGGTAGTAACAAAGAGGGAGGGAATAATTTTTGGGGTACTGAGGGCAGCAGTGGTGGAAATCTTGGAGGGTTTAATACTAATTCTGAGTCTGGG AATACTGGATGGGGCGCAGGTTCTAGAAAGAGTTCCTTACACCCTGCTGGTGAGGATGGATGGTCAGGAGGTGGTGGTTGGTGA
AA sequence Show only first row Show all	>Potri.001G034300.1 pacid=42791805 polypeptide=Potri.001G034300.1.p locus=Potri.001G034300 ID=Potri.001G034300.1.v4.1 annot-version=v4.1 MKKAKRKLPFTLVDEDDEEEEVAVKEKRAQNVSVDDDEDGLDKFETDGFIVDYNEEEVEGDCDGKDEQMKKKMRKKKSSKNLVLDDDDLELLRENQKPGL FQTKRVGNKKFKRLKKAKGCALGKDSGLSDDDVSLYDDSAEEKEAMYDDDINDMTDFIVDDDERYEKRAPMRLWELKEKKSRPVTMASSSSLEEAGYVFG DADELLKRQVLVKIVKPDDYDNFELDHFMAERDDHVKKTDLPERMQVMSEEITCTALVGETRRQEESSWILNQLITDMYPLLCKKKAQEGNGVGLLKKIN KEDIVRFLEMHDLEKYDIPFIAMYRKEKCLSMLEDLGEDGIQNECSNDTEGKPRLKWHKILWAINELDRKWLLLQKRKIMLEESYKKRYEEECNNIDDMA RLSLINLHFDTIMKSLMLAETEKDIDDVSMKFSLHFPPTEEVMEGKFKRRERRSAYSDYIKAGLWELAVKFVYSSKQFCQHLRQAKMGMDFWEDLNESPE VIASKFTCASLETPEAVLKGARHIAALEISCEPSVRKHARGFFTDEALVSTRPTPKGAKEIDFCHQFSSVKWLRDKPLGKFQDAQWLRIQKAEEEKLLEV TIRLPEDSLNKLISYSHKIYLVGGDDGYTQLWDEQRKLILQDVFSNCLLPSLEKETRVLLTTRAKCLVLMEYGEQLWNRASVAPYPHKRNVAGLEEGTGP RVMACCWGPGKPPTTFVMLDSCGQLLDVLQSGSISLRSQNVTGLQRKKYDQLRVHKFIISHQPDVIVLGAANASCPRLKDDIKEIVLKIEESSIDADQVL NGIGVIYGDETLPQLYEKSEVSLRHLPGQEGIVKRAVALGRYLQNPLAMIATLCGVQKEIVSWKLTSLDHFLTPEEKYGMIEMLMVDITNQVGVDINAAV SQDWLSAPLQFVSGLGSQKAAFLQRELAAGKIVNNRKELAICGLTEKKIFFNAVGFLRVCCGEILSFGCEYDMLDGTRIHPESYGLAEKLVKDVYDDVAE AHPLKHVRNNPQLLKDFDINAYADNFEIEQGENKKLTLYDIKTELLHGFLDPRRPYEEPTQDEEFCLISGKDEDAFAEGRIVQAIVCRVLSQRAFCALDS GLIGMITKDDYSDEAADYSLTKRLREGDILTCKIKQIDKSRHQVLLTCKESELKSSRDQNLHELEPYYCEGQSSLVSHQEIACKEDLKNKHFISRMIIHP HYENMTQNQAVEFLADKDVGERVFRPSSRGLHYLILTVKVFNGLYVHKDIIEDGKNLKDFSSMLDLGKTLKIGDDIYKDLDEVISQYVDPLVTHLKAILS FRKFKKGSKAEVDELLKSEKSDYPMRIPYCFGVSYEHPGTFILFYIRTNLHHEYIGLHPKGFKFRKQTFRKVEQLVAYFQKHIDDLKHQPAQMTRPITGS SARASTECGNEGGWKGQLNSSKDELSTLVSAGKKDCTRDDGGTGGHGSGRGRGHPSGLPRPNCVYGHGNRGGFGNGRGGNNRNGSDSGNNTSYWHDSGGN SGAGSSYSWGNNTGGNASSWGNNAGGNGSSSSWGGSGHPVNAGGRNSGGSGDDCQGIPGSGPPNGSDWMGSNKEGGNNFWGTEGSSGGNLGGFNTNSESG NTGWGAGSRKSSLHPAGEDGWSGGGGW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65440		GTB1	global transcription factor gr...		Potri.001G034300 [exp]	0	1
AT4G32440			Plant Tudor-like RNA-binding p...		Potri.001G173900 [exp]	4.12	0.7699
AT5G02520			unknown protein		Potri.004G077400 [exp]	11.22	0.7294
					Potri.001G348651 [exp]	12.96	0.6628
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Potri.004G094200 [exp]	19.28	0.7435
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Potri.014G192800 [exp]	26.83	0.7157
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Potri.007G066400 [exp]	28.80	0.7367	Pt-ABA3.1
AT1G20760			Calcium-binding EF hand family...		Potri.007G063200 [exp]	30.59	0.7255
AT5G15640			Mitochondrial substrate carrie...		Potri.008G100100 [exp]	34.74	0.6952
AT1G19485			Transducin/WD40 repeat-like su...		Potri.006G036601 [exp]	35.74	0.7311
					Potri.008G119000 [exp]	38.52	0.6998

Compare expression of checked genes

Potri.001G034300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.