Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12390 204 / 4e-67 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) AT5G13850 191 / 8e-62 NACA3 nascent polypeptide-associated complex subunit alpha-like protein 3 (.1) AT3G49470 184 / 9e-59 NACA2 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) AT4G10480 179 / 4e-57 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1), Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.2) AT1G33040 171 / 5e-54 NACA5 nascent polypeptide-associated complex subunit alpha-like protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G190800 [exp] 280 / 5e-97 AT3G12390 204 / 7e-67 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Potri.006G032000 [exp] 236 / 1e-79 AT3G12390 215 / 2e-71 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Potri.015G003300 [exp] 191 / 2e-61 AT3G49470 172 / 4e-54 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) Potri.012G006700 [exp] 176 / 1e-55 AT3G49470 171 / 1e-53 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026133 [exp] 239 / 6e-82 AT3G12390 204 / 2e-68 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Lus10041610 [exp] 234 / 9e-79 AT3G12390 229 / 7e-77 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Lus10008687 [exp] 230 / 1e-74 AT3G15660 197 / 7e-62 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) Lus10024109 [exp] 219 / 1e-73 AT3G12390 198 / 1e-65 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Lus10015579 [exp] 181 / 2e-57 AT3G49470 260 / 1e-88 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) Lus10032927 [exp] 180 / 2e-57 AT3G49470 260 / 2e-88 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01849 [poplar] [flax] NAC NAC domain
Representative CDS sequence Show only first row Show all	>Potri.001G034400.1 pacid=42793317 polypeptide=Potri.001G034400.1.p locus=Potri.001G034400 ID=Potri.001G034400.1.v4.1 annot-version=v4.1 ATGACTGCCCAAACTCAAGAAGAGCTCCTTGCTGCCCAGCTCGAAATTCAGAAGATTCTCGAAGCTGATAAGCCCGAGGTTGAGGATGAAGAGGATGACG AGGAGGATGACGATGAAGATGATGACAAGGATGAAGACGAAGCTGAAGGACAACAAGATGGAGATGCAAGTGGTAGATCAAAACAAAGCAGAAGTGAAAA GAAGAGTCGTAAAGCTATGTTGAAGCTTGGAATGAAAACTATCCCTGGTGTTAGTCGGGTTACAGTAAAAAAGAGCAAGAATATCTTGTTTGTTATCTCC AAACCTGATGTTTTCAAGAGCCCAACATCTGACACATATGTGATCTTTGGGGAGGCGAAGATCGAGGACTTGAGCTCCCAACTACAAACTCAGGCAGCAG AGCAGTTCAAGGCACCTGATCTCAGTCATGTGATTTCAAAACCTGAGACTTCAGCCGTGGCTCAGGATGACGAAGAGGTAGATGAAACTGGCGTGGAGCC AAAGGATATTGAATTAGTGATGACCCAGGCGGGAGTCTCCAGATCAAAGGCTGTCAAAGCTCTGAAGGCTGCAGATGGAGACATCGTTTCTGCAATCATG GATCTGACCACTTGA
AA sequence Show only first row Show all	>Potri.001G034400.1 pacid=42793317 polypeptide=Potri.001G034400.1.p locus=Potri.001G034400 ID=Potri.001G034400.1.v4.1 annot-version=v4.1 MTAQTQEELLAAQLEIQKILEADKPEVEDEEDDEEDDDEDDDKDEDEAEGQQDGDASGRSKQSRSEKKSRKAMLKLGMKTIPGVSRVTVKKSKNILFVIS KPDVFKSPTSDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVISKPETSAVAQDDEEVDETGVEPKDIELVMTQAGVSRSKAVKALKAADGDIVSAIM DLTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12390			Nascent polypeptide-associated...		Potri.001G034400 [exp]	0	1
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Potri.005G072700 [exp]	1.41	0.9714
AT3G27080		TOM20-3	translocase of outer membrane ...		Potri.003G173400 [exp]	2.44	0.9624	Pt-TOM20.2
AT1G67430			Ribosomal protein L22p/L17e fa...		Potri.015G094400 [exp]	3.74	0.9725	RPL17.2
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Potri.018G115400 [exp]	4.00	0.9613	Pt-RPS11.3
AT5G35530			Ribosomal protein S3 family pr...		Potri.006G222100 [exp]	5.29	0.9649
AT5G28060			Ribosomal protein S24e family ...		Potri.008G152500 [exp]	5.91	0.9643
AT3G04840			Ribosomal protein S3Ae (.1)		Potri.008G156300 [exp]	6.24	0.9691	RS3.2
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Potri.019G131900 [exp]	7.61	0.9453	Pt-RPL10.4
AT5G27990			Pre-rRNA-processing protein TS...		Potri.005G047901 [exp]	9.16	0.9460
AT2G34480			Ribosomal protein L18ae/LX fam...		Potri.002G057600 [exp]	9.89	0.9616	RPL18.7

Compare expression of checked genes

Potri.001G034400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.