Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07900 208 / 1e-63 Mitochondrial transcription termination factor family protein (.1) AT1G21150 169 / 6e-49 Mitochondrial transcription termination factor family protein (.1) AT5G64950 141 / 3e-38 Mitochondrial transcription termination factor family protein (.1) AT1G61970 121 / 7e-31 Mitochondrial transcription termination factor family protein (.1.2) AT1G61980 113 / 8e-28 Mitochondrial transcription termination factor family protein (.1) AT3G46950 108 / 3e-26 Mitochondrial transcription termination factor family protein (.1) AT1G62120 106 / 2e-25 Mitochondrial transcription termination factor family protein (.1) AT1G61990 106 / 2e-25 Mitochondrial transcription termination factor family protein (.1) AT1G62010 102 / 5e-24 Mitochondrial transcription termination factor family protein (.1) AT1G56380 100 / 1e-23 Mitochondrial transcription termination factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G034966 [exp] 438 / 6e-154 AT5G07900 201 / 1e-60 Mitochondrial transcription termination factor family protein (.1) Potri.003G190700 [exp] 417 / 7e-146 AT5G07900 213 / 3e-65 Mitochondrial transcription termination factor family protein (.1) Potri.001G034900 [exp] 412 / 8e-144 AT5G07900 184 / 2e-54 Mitochondrial transcription termination factor family protein (.1) Potri.004G222000 [exp] 405 / 4e-141 AT5G07900 200 / 1e-60 Mitochondrial transcription termination factor family protein (.1) Potri.001G034700 [exp] 402 / 8e-140 AT5G07900 202 / 2e-61 Mitochondrial transcription termination factor family protein (.1) Potri.001G035200 [exp] 391 / 1e-135 AT5G07900 168 / 3e-48 Mitochondrial transcription termination factor family protein (.1) Potri.003G189300 [exp] 392 / 2e-135 AT5G07900 178 / 6e-52 Mitochondrial transcription termination factor family protein (.1) Potri.001G034933 [exp] 388 / 3e-134 AT5G07900 194 / 3e-58 Mitochondrial transcription termination factor family protein (.1) Potri.003G190300 [exp] 377 / 1e-129 AT5G07900 209 / 8e-64 Mitochondrial transcription termination factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008688 [exp] 302 / 2e-100 AT5G07900 197 / 2e-59 Mitochondrial transcription termination factor family protein (.1) Lus10036450 [exp] 171 / 1e-49 AT5G07900 176 / 3e-51 Mitochondrial transcription termination factor family protein (.1) Lus10040820 [exp] 169 / 1e-48 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10004957 [exp] 159 / 5e-45 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 157 / 1e-44 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 157 / 3e-44 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10041122 [exp] 150 / 9e-42 AT5G07900 166 / 2e-47 Mitochondrial transcription termination factor family protein (.1) Lus10028912 [exp] 148 / 5e-41 AT5G64950 249 / 1e-79 Mitochondrial transcription termination factor family protein (.1) Lus10004329 [exp] 143 / 4e-39 AT5G64950 238 / 2e-75 Mitochondrial transcription termination factor family protein (.1) Lus10002883 [exp] 135 / 1e-35 AT5G07900 196 / 9e-59 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [poplar] [flax] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Potri.001G034500.1 pacid=42787751 polypeptide=Potri.001G034500.1.p locus=Potri.001G034500 ID=Potri.001G034500.1.v4.1 annot-version=v4.1 ATGGCTAACCACGTACCCCTCAGAAGCCTACTCCTGCTCTCTCTGATTCAAAAACGTTTCTTGAAAACATCTGCATCACCGTCATCATTTAAGGTTCAAT ACCTCATCGATTCATGCGGGCTTCCTTCACAGTTGGCCCTTTCAACTTACCAGAAGCTCCAACACGACAAGAAGAACCTCCCAAATGCTTATTCTGTGCT TCAGTACTTGAAAGATCATGACTTTAGCAACACCCACATTTCCAAACTAATCGACAAGTATCCCCGAGTCCTTCAAGTCAGAGTGGGAAGCAATCTAAAA CCCAAATTCGACTTCTTCACTGAAAATGGGTTTGTGGGTCAGCTTCTGCCTCAGCTTATTCTATCAAATCCGTCTGTTTTGAGAAGAGCTTTAGATTCTC AAATAAAACCATGTTTTGAGTTATTGAACTCACTTCTTGGTTGTAAGGAGAACCTTGTAGTGGCTCTTAAGCGTGCTTCTTGGCTGTTGACGGTGAATCT TAAGGTTGTTATTCAACCAAATGTTGATTTGTTGATTAAAGAGGGATTGCCTCTTGATAGGGTTGCAAAGCTAATTCTCTGGCAACCAAGAGCTGTACTA CAAAAGATGGACAGGATGGTTTATGCATTACATGCTCTTAAGAGTATGGGCCTTGATGTAGAGGATAATATCTTTATACATGCTCTTCGCGTGAGGATAC AGTTGCCTGAAACGACTTGGAAGAAGAAAATTGAAGGGATGAAGAGTTCGCAGTGGAGTGAAGAGGAGATTTTGGGGGCTTTTAAGCGCTACCCCCCAAT ACTAGCATTGTCAGAGAAGAAAATCAGGAGTTCAATGGATTTCTTTATCAATACAATGGAGCTGGAGAGACAAAACATAATTGCCTGTCCCCTTTTTCTT GGCTATTCAATTGATAAAAGGGTTCGTCCAAGGTATAATGTTATAAAGGTTTTGAAGTCGAAGAAGCTGACAAGTAGAGACAAGAAGATGACTACTTTGC TAACAATAAACGAGAAGAATTTCTTGACAAATTATGTCCACAGGTATGTAGATGTAGTCCCTGGTTTATTGGAGCTGTACATGGGTAATGGTAAGACAAA AAAGAAAGATAGTTGA
AA sequence Show only first row Show all	>Potri.001G034500.1 pacid=42787751 polypeptide=Potri.001G034500.1.p locus=Potri.001G034500 ID=Potri.001G034500.1.v4.1 annot-version=v4.1 MANHVPLRSLLLLSLIQKRFLKTSASPSSFKVQYLIDSCGLPSQLALSTYQKLQHDKKNLPNAYSVLQYLKDHDFSNTHISKLIDKYPRVLQVRVGSNLK PKFDFFTENGFVGQLLPQLILSNPSVLRRALDSQIKPCFELLNSLLGCKENLVVALKRASWLLTVNLKVVIQPNVDLLIKEGLPLDRVAKLILWQPRAVL QKMDRMVYALHALKSMGLDVEDNIFIHALRVRIQLPETTWKKKIEGMKSSQWSEEEILGAFKRYPPILALSEKKIRSSMDFFINTMELERQNIIACPLFL GYSIDKRVRPRYNVIKVLKSKKLTSRDKKMTTLLTINEKNFLTNYVHRYVDVVPGLLELYMGNGKTKKKDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07900			Mitochondrial transcription te...		Potri.001G034500 [exp]	0	1
AT5G23340			RNI-like superfamily protein (...		Potri.007G075600 [exp]	1.00	0.9291
AT3G62470			Pentatricopeptide repeat (PPR)...		Potri.014G121400 [exp]	2.44	0.9237
AT1G21740			Protein of unknown function (D...		Potri.005G070200 [exp]	6.32	0.8500
AT5G17900			microfibrillar-associated prot...		Potri.013G065600 [exp]	6.70	0.8985
AT4G18520			Pentatricopeptide repeat (PPR)...		Potri.002G091101 [exp]	8.06	0.9096
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Potri.002G085700 [exp]	9.16	0.8796
AT1G26650			unknown protein		Potri.008G091500 [exp]	12.00	0.8447
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.013G104100 [exp]	15.09	0.8684
AT5G18900			2-oxoglutarate (2OG) and Fe(II...		Potri.010G027201 [exp]	15.87	0.8487
AT3G42170			BED zinc finger ;hAT family di...		Potri.004G126780 [exp]	17.49	0.8774

Compare expression of checked genes

Potri.001G034500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.