Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07900 202 / 2e-61 Mitochondrial transcription termination factor family protein (.1) AT1G21150 162 / 5e-46 Mitochondrial transcription termination factor family protein (.1) AT5G64950 127 / 3e-33 Mitochondrial transcription termination factor family protein (.1) AT1G61970 121 / 1e-30 Mitochondrial transcription termination factor family protein (.1.2) AT5G23930 118 / 2e-29 Mitochondrial transcription termination factor family protein (.1) AT1G61980 110 / 6e-27 Mitochondrial transcription termination factor family protein (.1) AT1G61990 107 / 1e-25 Mitochondrial transcription termination factor family protein (.1) AT3G46950 105 / 6e-25 Mitochondrial transcription termination factor family protein (.1) AT1G62120 101 / 1e-23 Mitochondrial transcription termination factor family protein (.1) AT1G62085 101 / 2e-23 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G030300 [exp] 406 / 3e-141 AT5G07900 190 / 2e-56 Mitochondrial transcription termination factor family protein (.1) Potri.001G035000 [exp] 400 / 7e-139 AT5G07900 209 / 7e-64 Mitochondrial transcription termination factor family protein (.1) Potri.001G034966 [exp] 381 / 1e-131 AT5G07900 201 / 1e-60 Mitochondrial transcription termination factor family protein (.1) Potri.001G034500 [exp] 378 / 3e-130 AT5G07900 208 / 2e-63 Mitochondrial transcription termination factor family protein (.1) Potri.001G035200 [exp] 375 / 4e-129 AT5G07900 168 / 3e-48 Mitochondrial transcription termination factor family protein (.1) Potri.001G034900 [exp] 369 / 1e-126 AT5G07900 184 / 2e-54 Mitochondrial transcription termination factor family protein (.1) Potri.003G189300 [exp] 368 / 5e-126 AT5G07900 178 / 6e-52 Mitochondrial transcription termination factor family protein (.1) Potri.001G034933 [exp] 364 / 7e-125 AT5G07900 194 / 3e-58 Mitochondrial transcription termination factor family protein (.1) Potri.001G034600 [exp] 362 / 8e-124 AT5G07900 197 / 4e-59 Mitochondrial transcription termination factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008688 [exp] 351 / 2e-119 AT5G07900 197 / 2e-59 Mitochondrial transcription termination factor family protein (.1) Lus10036450 [exp] 175 / 5e-51 AT5G07900 176 / 3e-51 Mitochondrial transcription termination factor family protein (.1) Lus10004957 [exp] 164 / 9e-47 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10040820 [exp] 159 / 5e-45 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10002883 [exp] 152 / 3e-42 AT5G07900 196 / 9e-59 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 151 / 4e-42 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 150 / 1e-41 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10041122 [exp] 150 / 1e-41 AT5G07900 166 / 2e-47 Mitochondrial transcription termination factor family protein (.1) Lus10004329 [exp] 150 / 2e-41 AT5G64950 238 / 2e-75 Mitochondrial transcription termination factor family protein (.1) Lus10028912 [exp] 147 / 2e-40 AT5G64950 249 / 1e-79 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [poplar] [flax] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Potri.001G034700.2 pacid=42792084 polypeptide=Potri.001G034700.2.p locus=Potri.001G034700 ID=Potri.001G034700.2.v4.1 annot-version=v4.1 ATGGGCACCAAGGTAGCCATGAGAAACCTGCTTCCTCTCTTACAGAAACGTTTTCTATCAACATCATCGTCATCTACTCCAACACTTTCTCCTCTTTCCA CTGCTCCATCGTCATCATTTACAGTCGACTTCCTCATCAACTCATGTGGGCTTCCCTCAAAATCTGCTCTTTCTGTCTCCCAGAAGTTACAACTCGACGA GAAGAGCATCCAGAAGCCCCAATCAGTACTCGAGTTTCTGAAAGCTCACGGCTTTAAAGAAACCCACGTCGTCAAATTAATTGAGAAGCGGCCTGATGTC CTCAGACGTGGAGTAGACACCAATCTCAAGCCAAAATTTGAGTTCCTCATCGCAAATGGCTTTGTGGGTAAGCTTCTTCCTGAGCTTATTACATCAAATC CGAATGTTTTGGAAAGGGCTTTAGAATCTAATATGAAGCCATGTTTTGAGTATTTTAAGTCCATTCTTGGTAGTAATGACATGATTGTAGCGGCTTCTAA GCGATGTGCAGTGTTCTTGACCTATGATTGGAAGAGTATTATACAGCCAAATGTTGAGTTGTTGATAAAAGAGGGAGTGCCTGAAGAGAGAGTAGTAAAA ATGATTGTTGCACAACCAAGAATTATATATCAAAGGCGCGATAGGATGGTTTATGCAGTCAATGCTGTCAAGAATTTGGGTCTTGAGCCGAAGGCTCCCA TGTTTATATATGCTCTTAGATCGATCTTATCCATGAATGAGTTCACTTGGAAGAAGAAGATTGAGGTGATGAAAAGTTTTGGGTGGACTGAAGAAGAGAT TTTGCGGGCATTTAAGCAATACCCGTTTCAATTATCATCCTCGGAGGAAAAAATGAGGAAATCGATGGATTTCTTGTTGAATACTATTAAGATGGAAAGG CAGGCCATCATTGCCTGTCCTAAGTTTCTTATGTATTCAACTGAGAAAAGGCTCCGTCCTAGGTATGATGTTTTGAAGATTTTGAAGTCTAAGAAGCTAA TTGAAATCGGCAAGAAGACGAACTATCTGCTAACAGTTAGTGAGAAGAATTTCTTGGAGAATTATGTTACTAAGTATGCTGATAAAGTGCCAGGTTTATT GGAGGTATACAGGGGCACAACAAAGACCGAAAGATAG
AA sequence Show only first row Show all	>Potri.001G034700.2 pacid=42792084 polypeptide=Potri.001G034700.2.p locus=Potri.001G034700 ID=Potri.001G034700.2.v4.1 annot-version=v4.1 MGTKVAMRNLLPLLQKRFLSTSSSSTPTLSPLSTAPSSSFTVDFLINSCGLPSKSALSVSQKLQLDEKSIQKPQSVLEFLKAHGFKETHVVKLIEKRPDV LRRGVDTNLKPKFEFLIANGFVGKLLPELITSNPNVLERALESNMKPCFEYFKSILGSNDMIVAASKRCAVFLTYDWKSIIQPNVELLIKEGVPEERVVK MIVAQPRIIYQRRDRMVYAVNAVKNLGLEPKAPMFIYALRSILSMNEFTWKKKIEVMKSFGWTEEEILRAFKQYPFQLSSSEEKMRKSMDFLLNTIKMER QAIIACPKFLMYSTEKRLRPRYDVLKILKSKKLIEIGKKTNYLLTVSEKNFLENYVTKYADKVPGLLEVYRGTTKTER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07900			Mitochondrial transcription te...		Potri.001G034700 [exp]	0	1
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Potri.006G275300 [exp]	7.93	0.8378	FZF.2
AT3G54826			Zim17-type zinc finger protein...		Potri.008G037300 [exp]	8.12	0.8810
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Potri.006G045800 [exp]	8.94	0.8650
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Potri.004G164000 [exp]	10.53	0.8982
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.019G034300 [exp]	14.28	0.8574
AT1G74040		IPMS2, MAML-3, ...	SOPROPYLMALATE SYNTHASE 2, 2-i...		Potri.005G083100 [exp]	17.94	0.8572
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.018G070400 [exp]	20.92	0.8670
AT3G57280			Transmembrane proteins 14C (.1...		Potri.001G139800 [exp]	23.32	0.8417
AT5G07900			Mitochondrial transcription te...		Potri.001G035000 [exp]	24.73	0.8544
AT5G01160			RING/U-box superfamily protein...		Potri.006G095600 [exp]	27.23	0.8442

Compare expression of checked genes

Potri.001G034700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.