Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07900 184 / 2e-54 Mitochondrial transcription termination factor family protein (.1) AT1G21150 157 / 4e-44 Mitochondrial transcription termination factor family protein (.1) AT5G64950 120 / 2e-30 Mitochondrial transcription termination factor family protein (.1) AT1G61970 114 / 5e-28 Mitochondrial transcription termination factor family protein (.1.2) AT1G61980 108 / 4e-26 Mitochondrial transcription termination factor family protein (.1) AT1G62120 106 / 3e-25 Mitochondrial transcription termination factor family protein (.1) AT1G56380 99 / 9e-23 Mitochondrial transcription termination factor family protein (.1.2) AT1G61990 98 / 2e-22 Mitochondrial transcription termination factor family protein (.1) AT5G23930 97 / 5e-22 Mitochondrial transcription termination factor family protein (.1) AT3G46950 94 / 9e-21 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G034966 [exp] 593 / 0 AT5G07900 201 / 1e-60 Mitochondrial transcription termination factor family protein (.1) Potri.001G034500 [exp] 391 / 2e-135 AT5G07900 208 / 2e-63 Mitochondrial transcription termination factor family protein (.1) Potri.003G190700 [exp] 377 / 7e-130 AT5G07900 213 / 3e-65 Mitochondrial transcription termination factor family protein (.1) Potri.001G034700 [exp] 360 / 3e-123 AT5G07900 202 / 2e-61 Mitochondrial transcription termination factor family protein (.1) Potri.004G222000 [exp] 355 / 2e-121 AT5G07900 200 / 1e-60 Mitochondrial transcription termination factor family protein (.1) Potri.001G029400 [exp] 351 / 2e-119 AT5G07900 181 / 4e-53 Mitochondrial transcription termination factor family protein (.1) Potri.001G035000 [exp] 350 / 5e-119 AT5G07900 209 / 7e-64 Mitochondrial transcription termination factor family protein (.1) Potri.003G190300 [exp] 347 / 5e-118 AT5G07900 209 / 8e-64 Mitochondrial transcription termination factor family protein (.1) Potri.003G190400 [exp] 343 / 2e-116 AT5G07900 206 / 9e-63 Mitochondrial transcription termination factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008688 [exp] 295 / 1e-97 AT5G07900 197 / 2e-59 Mitochondrial transcription termination factor family protein (.1) Lus10004957 [exp] 175 / 3e-51 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10040820 [exp] 166 / 1e-47 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 159 / 4e-45 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 152 / 2e-42 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10036450 [exp] 139 / 2e-37 AT5G07900 176 / 3e-51 Mitochondrial transcription termination factor family protein (.1) Lus10028912 [exp] 131 / 2e-34 AT5G64950 249 / 1e-79 Mitochondrial transcription termination factor family protein (.1) Lus10002883 [exp] 130 / 5e-34 AT5G07900 196 / 9e-59 Mitochondrial transcription termination factor family protein (.1) Lus10016553 [exp] 124 / 4e-33 AT5G07900 171 / 7e-51 Mitochondrial transcription termination factor family protein (.1) Lus10004329 [exp] 125 / 2e-32 AT5G64950 238 / 2e-75 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [poplar] [flax] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Potri.001G034900.3 pacid=42790290 polypeptide=Potri.001G034900.3.p locus=Potri.001G034900 ID=Potri.001G034900.3.v4.1 annot-version=v4.1 ATGGCAATGAAGCTTTTTCTTATTCAAAAACGTTTTCTAGCAACGCAATCTACTAGTAGCTCACTATCCTCATCATCTTCGTCTTCGTCTTCATTTACGG TGGATTTTCTCGTCAACTCATGTGGGCTTCCTTTAAAATCTGCACTTTTAGCTTCCCGGAAGCTGAAGCTGGACAAAAAAAATCTTCGAAATCCTCCGTT TGTGCTACAATTCTTGAAATCTCACAACTTCGAAGAAACCCACATCTCCAAATTGATTGAGAGGCGGCCTCAAGTCCTCCAGTCCAGAGTAGAAGGCAAT CTCGCTCCCAGATTCAAGTTTCTGATCGCAAATGGCTTTGTGGGTAAGCTCCTTCACGACCTTATCATACACCATACTGAAATTCTTACAAGTGCCTTAG ATTCTCGTATTAAACCAGCTTTTTACCTTTTGAAGTCGTTTCTATACTGTAATGAGAATATTGTTGCGGCTCTTAAGCGTTCTTCCAGGTTGTTGACGGC TGATTTGAATGTTAATGCGCAACCTAACATTGATTTTTTGAGAAAAGAGGGAGTTCCTGTTAACATGGTAGCAAAATTGATTATCTTAAATCCAGGAACT ATACTGAGTAAGCGTGGCAGGATGGTTTATGCGATGAATGCTATTAAGAATTTGGGTCTGGAGCCAGATAAGACGATGTTTGTACGTGCTCTTAGCGTGA GGTTACAAATGACTGAAACAACTTGGAATAAGAAAATTGAAGTGATGAAGAGTTTGCAGTGGAGTGAAGAGGAGATTCTGAGGGCTTTTAAGAGGTACCC ACAAATATTAGCATTCTCGGAGGAGAAAATCAGGAGTGCAATAGATTTCTATATCAATACTATGGAGTTGGAAAGACAAATTATAATTGCTAATCCTAAT TTTATTGGCTTCTCAATTGATAAAAGGATTCGCCCAAGGTATAATGTTATAAATGTCTTAGAGTCGAAGGAACTGATTAAAGGAGACATGAAAATTTCTA CTCTGCTAGCTACGAGTGAGAAGAAGTTCTTTATAAATTATGTCAGCAGGTTTGCGGATGAAGTCCCTGGTCTATTAGAGCTGTACAAGGGTACAGCCAT GAGAACAGAGAAAGACGCTTGA
AA sequence Show only first row Show all	>Potri.001G034900.3 pacid=42790290 polypeptide=Potri.001G034900.3.p locus=Potri.001G034900 ID=Potri.001G034900.3.v4.1 annot-version=v4.1 MAMKLFLIQKRFLATQSTSSSLSSSSSSSSSFTVDFLVNSCGLPLKSALLASRKLKLDKKNLRNPPFVLQFLKSHNFEETHISKLIERRPQVLQSRVEGN LAPRFKFLIANGFVGKLLHDLIIHHTEILTSALDSRIKPAFYLLKSFLYCNENIVAALKRSSRLLTADLNVNAQPNIDFLRKEGVPVNMVAKLIILNPGT ILSKRGRMVYAMNAIKNLGLEPDKTMFVRALSVRLQMTETTWNKKIEVMKSLQWSEEEILRAFKRYPQILAFSEEKIRSAIDFYINTMELERQIIIANPN FIGFSIDKRIRPRYNVINVLESKELIKGDMKISTLLATSEKKFFINYVSRFADEVPGLLELYKGTAMRTEKDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07900			Mitochondrial transcription te...		Potri.001G034900 [exp]	0	1
AT3G14740			RING/FYVE/PHD zinc finger supe...		Potri.011G103100 [exp]	3.46	0.8861
AT1G06475			unknown protein		Potri.002G058400 [exp]	4.47	0.8796
AT3G01980			NAD(P)-binding Rossmann-fold s...		Potri.017G067332 [exp]	5.65	0.8760
AT1G09815		POLD4	polymerase delta 4 (.1)		Potri.013G076400 [exp]	6.92	0.8646
AT5G59970			Histone superfamily protein (....		Potri.007G013500 [exp]	8.94	0.8583	HFO909
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Potri.014G085900 [exp]	9.48	0.8563
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Potri.012G060000 [exp]	14.07	0.8399	Pt-MSH2.1
AT4G25120		ATSRS2	ARABIDOPSIS THALIANA SUPPRESSO...		Potri.012G114100 [exp]	16.70	0.8786
AT3G20390			endoribonuclease L-PSP family ...		Potri.001G435700 [exp]	19.07	0.8092
AT3G04600			Nucleotidylyl transferase supe...		Potri.009G159300 [exp]	23.36	0.7201

Compare expression of checked genes

Potri.001G034900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.