Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07900 201 / 1e-60 Mitochondrial transcription termination factor family protein (.1) AT1G21150 164 / 4e-47 Mitochondrial transcription termination factor family protein (.1) AT5G64950 130 / 2e-34 Mitochondrial transcription termination factor family protein (.1) AT1G61970 117 / 2e-29 Mitochondrial transcription termination factor family protein (.1.2) AT1G62120 110 / 1e-26 Mitochondrial transcription termination factor family protein (.1) AT1G61980 108 / 4e-26 Mitochondrial transcription termination factor family protein (.1) AT5G23930 104 / 1e-24 Mitochondrial transcription termination factor family protein (.1) AT1G61990 98 / 2e-22 Mitochondrial transcription termination factor family protein (.1) AT1G62010 97 / 3e-22 Mitochondrial transcription termination factor family protein (.1) AT1G56380 95 / 2e-21 Mitochondrial transcription termination factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G034900 [exp] 593 / 0 AT5G07900 184 / 2e-54 Mitochondrial transcription termination factor family protein (.1) Potri.001G034500 [exp] 416 / 2e-145 AT5G07900 208 / 2e-63 Mitochondrial transcription termination factor family protein (.1) Potri.003G190700 [exp] 375 / 2e-129 AT5G07900 213 / 3e-65 Mitochondrial transcription termination factor family protein (.1) Potri.001G034700 [exp] 374 / 7e-129 AT5G07900 202 / 2e-61 Mitochondrial transcription termination factor family protein (.1) Potri.004G222000 [exp] 365 / 2e-125 AT5G07900 200 / 1e-60 Mitochondrial transcription termination factor family protein (.1) Potri.001G035000 [exp] 359 / 8e-123 AT5G07900 209 / 7e-64 Mitochondrial transcription termination factor family protein (.1) Potri.003G190300 [exp] 354 / 9e-121 AT5G07900 209 / 8e-64 Mitochondrial transcription termination factor family protein (.1) Potri.003G190400 [exp] 350 / 2e-119 AT5G07900 206 / 9e-63 Mitochondrial transcription termination factor family protein (.1) Potri.001G029400 [exp] 346 / 1e-117 AT5G07900 181 / 4e-53 Mitochondrial transcription termination factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008688 [exp] 304 / 4e-101 AT5G07900 197 / 2e-59 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 167 / 3e-48 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10004957 [exp] 164 / 9e-47 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10040820 [exp] 161 / 9e-46 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 160 / 1e-45 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10036450 [exp] 147 / 1e-40 AT5G07900 176 / 3e-51 Mitochondrial transcription termination factor family protein (.1) Lus10028912 [exp] 132 / 6e-35 AT5G64950 249 / 1e-79 Mitochondrial transcription termination factor family protein (.1) Lus10002883 [exp] 132 / 7e-35 AT5G07900 196 / 9e-59 Mitochondrial transcription termination factor family protein (.1) Lus10041122 [exp] 130 / 2e-34 AT5G07900 166 / 2e-47 Mitochondrial transcription termination factor family protein (.1) Lus10004329 [exp] 128 / 2e-33 AT5G64950 238 / 2e-75 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [poplar] [flax] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Potri.001G034966.1 pacid=42792974 polypeptide=Potri.001G034966.1.p locus=Potri.001G034966 ID=Potri.001G034966.1.v4.1 annot-version=v4.1 ATGGCCATGAAGCTTTTTCTTATTCGAAAACGTTTTCTAGCAACGCAATCTACTAGTAGCTCACTATCCCCATCGTCTTCGTCTTCATTTACGGTGGATT TTCTCGTCAACTCATGTGGGCTTCCTTTAAAATCTGCTCTTTTAGCTTCCCGGAAGCTGAAGCTGGACAAAAAAAACCTTCGAAATCCTCCTTTCGTGCT ACAATTCTTGAAATCTCACAACTTTGACGAAACCCACATCTCCAAGTTGATCGAGAAGCGGCCTGAAGTCCTCCAGTCCAGAGTAGAAGGCAATCTCACT CCCAAATTCGATTTTCTCGTCGCAAATGGCTTCGTGGGTAAGCTCCTTCACGACCTTATCATACACCATACTGAGATATTCAAAAGGGCCTTAGATTCTC GTATTAAACCAGCGTTTTCCCTTTTGAAGTCGATTCTACATAGTAATGAGAACGTTGTTGTGGCTCTTAAGCGTTCTTCGAGGTTGTTGTCGGCTGATTT GAACGTTAATGCGCAACCTAACATTGATTTTTTGAGAAAAGAGGGAGTTCCTGCTGATATGGTAGCAAAATTGATTATCTTGAATCCAGGAACTATACTG AGTAAGCGTGACAGGATGGTTTATGCGATGAATGCTATTAAGAATTTGGGTCTTGAGCCAAATAATACAATGTTTGTTCGTGCTCTTATCGTGAGGTTAC AAATGACTGAAACAACTTGGAATAAGAAAATTGAAGTGATGAAGAGTTTGCAGTGGAGTGAAGAGGAGATTCTGGGGGCTTTTAAGAGGTACCCACAAAT TTTAGCAATGTCGGAGGAGAAAATCAGGAGTGCAATGGATTTCTATATCAATACTATGGAGTTGCAAAGACAAATTATAATTGCTTGTCCTATTTTTCTT GGATATTCAATTGATAAAAGGATTCGTCCAAGGTATAATGTTATAAAGGTTTTGGAGTCGAAGGAACTGATTAAAGGAGACATGAAAATTTCTACTCTGC TAAATACGAGCGAGGAGACATTCTTGATAAATTATGTCAGCAGGTATGTGGAGGAAGTCCCTGGGTTATTGGAGCTGTACAAGGGTACTGCCAAGAGAAC AGAGAAAGATGCTTGA
AA sequence Show only first row Show all	>Potri.001G034966.1 pacid=42792974 polypeptide=Potri.001G034966.1.p locus=Potri.001G034966 ID=Potri.001G034966.1.v4.1 annot-version=v4.1 MAMKLFLIRKRFLATQSTSSSLSPSSSSSFTVDFLVNSCGLPLKSALLASRKLKLDKKNLRNPPFVLQFLKSHNFDETHISKLIEKRPEVLQSRVEGNLT PKFDFLVANGFVGKLLHDLIIHHTEIFKRALDSRIKPAFSLLKSILHSNENVVVALKRSSRLLSADLNVNAQPNIDFLRKEGVPADMVAKLIILNPGTIL SKRDRMVYAMNAIKNLGLEPNNTMFVRALIVRLQMTETTWNKKIEVMKSLQWSEEEILGAFKRYPQILAMSEEKIRSAMDFYINTMELQRQIIIACPIFL GYSIDKRIRPRYNVIKVLESKELIKGDMKISTLLNTSEETFLINYVSRYVEEVPGLLELYKGTAKRTEKDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07900			Mitochondrial transcription te...		Potri.001G034966 [exp]	0	1
AT5G36950		DEGP10	DegP protease 10 (.1)		Potri.008G079900 [exp]	2.00	0.8257
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Potri.006G153900 [exp]	6.16	0.7943	Pt-SYNC3.1
					Potri.019G076200 [exp]	7.48	0.7243
AT3G57000			nucleolar essential protein-re...		Potri.006G040600 [exp]	8.66	0.7656
AT3G56150		ATTIF3C1, ATEIF...	eukaryotic translation initiat...		Potri.002G016900 [exp]	9.48	0.7481	Pt-TIF3.10
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.004G029900 [exp]	10.53	0.7930
AT4G17520			Hyaluronan / mRNA binding fami...		Potri.003G081600 [exp]	11.13	0.7730
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Potri.002G198500 [exp]	15.29	0.7363
AT1G20220			Alba DNA/RNA-binding protein (...		Potri.005G194600 [exp]	15.49	0.7378
AT1G09810		ECT11	evolutionarily conserved C-ter...		Potri.004G223800 [exp]	17.32	0.7297

Compare expression of checked genes

Potri.001G034966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.