Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07900 209 / 6e-64 Mitochondrial transcription termination factor family protein (.1) AT1G21150 157 / 3e-44 Mitochondrial transcription termination factor family protein (.1) AT1G61970 124 / 1e-31 Mitochondrial transcription termination factor family protein (.1.2) AT1G61990 119 / 6e-30 Mitochondrial transcription termination factor family protein (.1) AT3G46950 114 / 5e-28 Mitochondrial transcription termination factor family protein (.1) AT1G61980 105 / 8e-25 Mitochondrial transcription termination factor family protein (.1) AT1G62085 101 / 2e-23 Mitochondrial transcription termination factor family protein (.1) AT1G56380 100 / 2e-23 Mitochondrial transcription termination factor family protein (.1.2) AT5G23930 100 / 6e-23 Mitochondrial transcription termination factor family protein (.1) AT1G62120 97 / 6e-22 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G034700 [exp] 415 / 1e-144 AT5G07900 202 / 2e-61 Mitochondrial transcription termination factor family protein (.1) Potri.001G034600 [exp] 385 / 1e-132 AT5G07900 197 / 4e-59 Mitochondrial transcription termination factor family protein (.1) Potri.001G034966 [exp] 383 / 6e-132 AT5G07900 201 / 1e-60 Mitochondrial transcription termination factor family protein (.1) Potri.001G030300 [exp] 380 / 1e-130 AT5G07900 190 / 2e-56 Mitochondrial transcription termination factor family protein (.1) Potri.003G189300 [exp] 379 / 4e-130 AT5G07900 178 / 6e-52 Mitochondrial transcription termination factor family protein (.1) Potri.004G222000 [exp] 377 / 1e-129 AT5G07900 200 / 1e-60 Mitochondrial transcription termination factor family protein (.1) Potri.003G190300 [exp] 375 / 1e-128 AT5G07900 209 / 8e-64 Mitochondrial transcription termination factor family protein (.1) Potri.001G034900 [exp] 372 / 6e-128 AT5G07900 184 / 2e-54 Mitochondrial transcription termination factor family protein (.1) Potri.001G034500 [exp] 372 / 7e-128 AT5G07900 208 / 2e-63 Mitochondrial transcription termination factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008688 [exp] 317 / 5e-106 AT5G07900 197 / 2e-59 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 192 / 3e-57 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10004957 [exp] 181 / 3e-53 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 179 / 9e-53 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10040820 [exp] 162 / 4e-46 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10036450 [exp] 161 / 1e-45 AT5G07900 176 / 3e-51 Mitochondrial transcription termination factor family protein (.1) Lus10028912 [exp] 150 / 2e-41 AT5G64950 249 / 1e-79 Mitochondrial transcription termination factor family protein (.1) Lus10041122 [exp] 147 / 3e-40 AT5G07900 166 / 2e-47 Mitochondrial transcription termination factor family protein (.1) Lus10002883 [exp] 146 / 6e-40 AT5G07900 196 / 9e-59 Mitochondrial transcription termination factor family protein (.1) Lus10004329 [exp] 145 / 1e-39 AT5G64950 238 / 2e-75 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [poplar] [flax] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Potri.001G035000.3 pacid=42791337 polypeptide=Potri.001G035000.3.p locus=Potri.001G035000 ID=Potri.001G035000.3.v4.1 annot-version=v4.1 ATGGCCGCCAATAAACCTAGCAGAAGCTTGCTTTCTCTGCTTCAAAAACGTTTTCTATTAACATTTTCTTCTGCACTTTCTCCTCCTACAGCTCAATTAC CCACCTGTAGCTCTTCTTCATCGTCGTCGTCCTTTACAGTTCATTTCCTTGTGAATTCATGCGGGCTCACTTCAAAATCTGCTCTTTCAGTTTCCAAGAA GTTCCAAATCCGTGAAAACAACCTCCAAAACCCTCAATCCGTACTCCAGTTCTTGAAAGCTCATGACTTTAGCGAAACCCATATTTCCAAATTGATTGAA AAGCGACCCAAGATTCTCCTGCGCAGAATTGAAGACAATCTGAAAGCCAAGTTTGACTTCTTTATTGAGAATGGTTTTGCGGGTCAGCTTCTGCCCCAAC TTATTTTATCAAATCCGGTGATTTTGGAAAGGGCCTTAGATTCCCATATTAAACCATCTCTTCTGTACTTCAAGTCTATTCTCGGTACCAGCGAGAAAGT TATTGCAGCTTCCAAACGTTCTGTGTTTTTGTTGACTTGTGATTGGAACAGTATCGTGCTACCAAATGTTGATTTCTTGATTAAAGAGGGAGTGCCTGTT GATAGGGTTGCAAAGTTGTTTCTGTTTCACCCACAGGTTGTGCAACGGAAGCATGATAGGATGGTTTATGCAGTGAATACTGTCAAGGATTTGGGACTTG AACCAGAGGTTTCTATTTTTATATATGCTCTAACTACCATGATGCAATCGAGCGAGTCCACTTTGAAGAAGAAAGTTGAAGTGTTGAAGAGTTTGGGGTG GACGGAGGAGGAGATTTTCCGGGCTTTTAAGCAAGACCCTGCTATTTTGCGATTTTCAGAGGAAAAGATCAGGGGTGTGATGGATTTCTTGGTGAATACT GTGGGATTGAGGCCACAAACTATTATTGCAAACCCTTTGTTTCTTCATTACTCAATTAACAAAAGGCTTCGACCAAGGTATAATGTTTTGAAGGCTTTGG AGTCGAAGAAGCTCTTTGATGAGGGCATGAGCATTGGGTCGGCGCTAAAAATGAGCGAGAAGAAATTCATGAAGAATTATGTTTCCAAGTATGTACACAG TGTCCCCGGTATATTGGACACATATAAGGGTATCATCAAGCCTATAAAGATGGATACTTGA
AA sequence Show only first row Show all	>Potri.001G035000.3 pacid=42791337 polypeptide=Potri.001G035000.3.p locus=Potri.001G035000 ID=Potri.001G035000.3.v4.1 annot-version=v4.1 MAANKPSRSLLSLLQKRFLLTFSSALSPPTAQLPTCSSSSSSSSFTVHFLVNSCGLTSKSALSVSKKFQIRENNLQNPQSVLQFLKAHDFSETHISKLIE KRPKILLRRIEDNLKAKFDFFIENGFAGQLLPQLILSNPVILERALDSHIKPSLLYFKSILGTSEKVIAASKRSVFLLTCDWNSIVLPNVDFLIKEGVPV DRVAKLFLFHPQVVQRKHDRMVYAVNTVKDLGLEPEVSIFIYALTTMMQSSESTLKKKVEVLKSLGWTEEEIFRAFKQDPAILRFSEEKIRGVMDFLVNT VGLRPQTIIANPLFLHYSINKRLRPRYNVLKALESKKLFDEGMSIGSALKMSEKKFMKNYVSKYVHSVPGILDTYKGIIKPIKMDT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07900			Mitochondrial transcription te...		Potri.001G035000 [exp]	0	1
AT1G08610			Pentatricopeptide repeat (PPR)...		Potri.019G019200 [exp]	1.00	0.9301
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.019G034300 [exp]	1.41	0.9291
AT1G56345			Pseudouridine synthase family ...		Potri.013G009300 [exp]	2.00	0.9154
AT1G16790			ribosomal protein-related (.1)		Potri.010G254100 [exp]	2.23	0.9136
AT2G37000	TCP	TCP11	TCP family transcription facto...		Potri.016G094800 [exp]	3.46	0.9029
AT2G01410			NHL domain-containing protein ...		Potri.001G156300 [exp]	3.46	0.9201
AT1G16670			Protein kinase superfamily pro...		Potri.011G142100 [exp]	3.46	0.9132
AT1G74040		IPMS2, MAML-3, ...	SOPROPYLMALATE SYNTHASE 2, 2-i...		Potri.005G083100 [exp]	7.14	0.8937
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Potri.006G045800 [exp]	7.21	0.8986
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.001G331400 [exp]	7.48	0.9062	CHC901

Compare expression of checked genes

Potri.001G035000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.