Plant FIBer expression Database

Potri.001G035700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G54380 457 / 3e-160 AtSAC3C yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3)
AT3G06290 192 / 2e-53 AtSAC3B yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
AT2G39340 47 / 2e-05 AtSAC3A yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G028200
[exp]
183 / 2e-50 AT3G06290 1155 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
Potri.010G213700
[exp]
52 / 7e-07 AT2G39340 845 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
Potri.008G047700
[exp]
49 / 6e-06 AT2G39340 880 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024110
[exp]
500 / 9e-177 AT3G54380 412 / 1e-142 yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3)
Lus10041609
[exp]
488 / 1e-171 AT3G54380 429 / 3e-149 yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3)
Lus10034008
[exp]
186 / 3e-51 AT3G06290 1093 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
Lus10012769
[exp]
166 / 3e-44 AT3G06290 1033 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
Lus10001973
[exp]
45 / 0.0001 AT2G39340 914 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
Lus10030305
[exp]
42 / 0.0007 AT2G39340 935 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF03399 SAC3_GANP SAC3/GANP family
Representative CDS sequence
>Potri.001G035700.1 pacid=42792715 polypeptide=Potri.001G035700.1.p locus=Potri.001G035700 ID=Potri.001G035700.1.v4.1 annot-version=v4.1
ATGGAGAGAAGCCATCAAAATCGTAAGGGACGTGGCAACCATTCCTCTTTCTCTTCCTCGTCTCAATCAACAAGGATCAGAAACACCAAAGTTTCAAACT
TTAATGAATCCAGCAGTGCCACTAATTATGCTACTAACAATAGAAGTAATGCCCATGATGATCCCCAGTTGAAACCCAGAAGAGGAAACACGAGTAGCAG
CAATAACCAGAAAGAAAAAATCAAAACAGAAGAAGATAAGGAAGCGGATTCTTCAGATTTTCCAAGACTAATTGGAACTTGCCCTTTTATGTGCCCAGAG
AGTGAAAGGTCCCAACGAGAGCGACTGCAAGATTTAGCTGTGTTTGAGAGGCTCCATGGAAATCCCAGGAAAACATCTCAAGCCTTAGCAGTCAAAAAGT
TTTGCAGAACTATATCCGCCAAGCACATGCAAGCATCTGATGTGCGGCCGCTTCCAGTATTAGAAGACACTTTGGCCTATCTCTTAAATTTGCTGGATTC
AACAGACCATCCTTTTGAAGTGGTTCATGACTTCATTTTTGATAGGACAAGGTCTATAAGACAAGATCTTAGCATGCAGAATATTGTTGATGATAAATCA
ATCTACATGTATGAGAAAATGGTTAAATTTCATGTTATATCTCACCTCAAGCTTCAACGTTGTCGTAGCAGTTCAGATATTTCTTCAGTGCATTACCTCA
ACATGGAGCAGCTTACAAAGGCTCTGACATCTCTATATAATCTGTATGATGCAAATCGAGATTCTGGTACTGTTTATGGAAATGAGGCTGAGTTTCGTTC
GCTTTACGTGCTGCTTCATCTTGATTCTAACACCCAACCCATGGGGGAGTCACTTTCTTTGTGGTTTCGTTTTGTGCTTCATCCAATTATCCGGTCAAAA
GAAATGTGTTTTGCCCGGAGTGTTCTAAGGTTTTATCAGATGGGCAACTATATGCGTTTCTTTTCTACCATATCTGCCGAGGCATCTTATCTGCAGTACT
GTATTCTTGAACGTTACATCAACAAGGTTCGAGCATTGTCCCTGTCATATATAAATAATGCCGGCTACAAGCTTCATCCATATCCTCTGGTACACCTATC
TAAGCTCTTGAAGATGAAGGAATCAGATTTGGAGGTATTGTGCAATGCTTGTGGCCTGGAGACCTGTGCAGATGATATGGGAAATAAGTTGCTACCTACT
AAGCAAACGACTTTCTGTTGTCCCAAGGAAGGGTTTCAAAGCTACAACTTCACGGGTTTGGAAAAGTTCGAGAGCTGA
AA sequence
>Potri.001G035700.1 pacid=42792715 polypeptide=Potri.001G035700.1.p locus=Potri.001G035700 ID=Potri.001G035700.1.v4.1 annot-version=v4.1
MERSHQNRKGRGNHSSFSSSSQSTRIRNTKVSNFNESSSATNYATNNRSNAHDDPQLKPRRGNTSSSNNQKEKIKTEEDKEADSSDFPRLIGTCPFMCPE
SERSQRERLQDLAVFERLHGNPRKTSQALAVKKFCRTISAKHMQASDVRPLPVLEDTLAYLLNLLDSTDHPFEVVHDFIFDRTRSIRQDLSMQNIVDDKS
IYMYEKMVKFHVISHLKLQRCRSSSDISSVHYLNMEQLTKALTSLYNLYDANRDSGTVYGNEAEFRSLYVLLHLDSNTQPMGESLSLWFRFVLHPIIRSK
EMCFARSVLRFYQMGNYMRFFSTISAEASYLQYCILERYINKVRALSLSYINNAGYKLHPYPLVHLSKLLKMKESDLEVLCNACGLETCADDMGNKLLPT
KQTTFCCPKEGFQSYNFTGLEKFES

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G54380 AtSAC3C yeast Sac3 homolog C, SAC3/GAN... Potri.001G035700
[exp]
0 1
AT5G25360 unknown protein Potri.006G068600
[exp]
1.00 0.7961
AT5G66010 RNA-binding (RRM/RBD/RNP motif... Potri.005G101200
[exp]
8.48 0.6694
AT4G32190 Myosin heavy chain-related pro... Potri.006G255800
[exp]
9.48 0.7195
AT3G61960 Protein kinase superfamily pro... Potri.014G107000
[exp]
10.90 0.6827
Potri.017G037400
[exp]
14.07 0.7012
AT4G06676 unknown protein Potri.004G222300
[exp]
14.42 0.7142
AT5G26610 D111/G-patch domain-containing... Potri.013G002100
[exp]
16.91 0.6681
AT1G07650 Leucine-rich repeat transmembr... Potri.018G135901
[exp]
17.29 0.6905
AT5G42990 UBC18 ubiquitin-conjugating enzyme 1... Potri.002G030800
[exp]
17.94 0.6299
AT4G27190 NB-ARC domain-containing disea... Potri.001G447132
[exp]
19.00 0.6818

Potri.001G035700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.