Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56790 312 / 7e-97 Protein kinase superfamily protein (.1) AT1G55200 311 / 3e-96 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G13690 311 / 2e-95 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G38560 261 / 2e-77 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G52290 253 / 5e-76 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT3G24540 252 / 8e-76 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G70460 255 / 4e-75 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 254 / 1e-74 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT3G24550 251 / 4e-74 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G07870 244 / 6e-74 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G189850 [exp] 735 / 0 AT5G56790 319 / 3e-99 Protein kinase superfamily protein (.1) Potri.001G224800 [exp] 344 / 1e-109 AT5G56790 249 / 1e-73 Protein kinase superfamily protein (.1) Potri.001G200000 [exp] 324 / 9e-101 AT3G13690 1051 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.003G034900 [exp] 321 / 1e-99 AT3G13690 1045 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G150100 [exp] 294 / 1e-89 AT3G13690 773 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G185500 [exp] 273 / 1e-82 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1) Potri.001G183000 [exp] 256 / 8e-77 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.004G153600 [exp] 256 / 7e-76 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.009G115200 [exp] 251 / 4e-74 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041608 [exp] 704 / 0 AT1G55200 318 / 4e-98 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024111 [exp] 695 / 0 AT5G56790 317 / 2e-98 Protein kinase superfamily protein (.1) Lus10006148 [exp] 324 / 8e-101 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10001996 [exp] 323 / 3e-99 AT3G13690 649 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10036100 [exp] 297 / 2e-91 AT1G55200 201 / 1e-55 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008566 [exp] 286 / 3e-87 AT1G55200 657 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10018944 [exp] 261 / 2e-78 AT3G13690 332 / 2e-105 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10011098 [exp] 258 / 2e-76 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10009559 [exp] 258 / 6e-75 AT3G13690 418 / 2e-134 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10022129 [exp] 254 / 1e-74 AT3G24550 474 / 3e-159 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G035900.2 pacid=42793215 polypeptide=Potri.001G035900.2.p locus=Potri.001G035900 ID=Potri.001G035900.2.v4.1 annot-version=v4.1 ATGTCTGGAGATGTTCAGAGAGTAGTGGTGATCCAAGATGCAACGCGGGAGATTAATCTGATTGCAATCAGATGGGTCCTTCATGGATTTTCACTTAATC TAGGAGATGCAATTATACTCTTTGGAGCTTTTCACCAGGTTAATAATTTATCTTTCACTGAAAGTGAAACCCTGTTGGGATACAGGTTCAAGGTGGAATC AAGATCAATGTTTGGGGTAAACCCAAAATTCATTGCAGAAGAAGTTTCCAAAAGGAAAGAAGAGTGCATTAACAATGTGGAAGTTATAGAAATCGCTAAG CAATGTGAAAAGGAACAGATTGAGTTCCATGTAGAAGTGCGTGCTGGACCTAATCCAAAGGAGCTTGCTCTAAAAGCTGCTAAAAATTTCAGGGCCACAT GGGTGGTCCTTGACAGGCAAATGAAGAGAGACAAGAACTACTTCATGGAAAATCTTCCATGTGGGATATCAAGGATGAAGCATAACAACACCATTGAACA ACTAAGAGGTCCAAAGAGCACAAAAGTGACTTCAGAAACAAAAGTTAAGAGCAAAAGTGAAGACAAAATAAAAGTAGATGAAAAAGACAAAGGCAAAGGA GTAGAAAAGGATGAACAAGAGGAAGAAAAGGTACCATATGATGAAATGATACCAGGGAGCCCAAAGCGCAAAAGGTCTGGCCGCGCTTCATCTTCAACCT CAACTACTGGTTATCATGAGCAATGTACTTCAAGTTCTACATTTAAAACTGCAAAGCAAGCCTACATGAATTTTCAAGAGGAAGAAAAAAACACTACCAG CACAGAACAAGACACATCAGGTAAACAATCCCTCGCTGCAAGTACTGAGTTTGAGCAGAGGGAAAAGGAGGCAGTGATCCCAAATGAACAAAACAACATA GATGATTGGATGGGAGGGAGTCCTAAGGATGAGGTATTCAGAAATTCCATTTGCTCAGTTTGCAAGAATAGACGGCCAAAGATAGGATGGAAGAGAGACT TCAGCTATGCAGAGATCCATGCTGCAACAGAAGGATCTTCCCAAACAAAATTCCTATCGGAAGGTGGTTTTGGCTCTGTCTACAGAGGCGACCTGGATGG GCTGGCAATTGCCGTAAAGCAACACAATGGTGCAAGTTTCCAAGGAGAGAAGGAATTCAAGTCTGAAGTTGAAGTCCTCAGCAAAGTCCGACATGAGAAT TTGGTGGTGTTGTTAGGGTCATGTTCTAAAGGAAGTGACAGGTTGCTTGTTTATGAATATGTGTGCAATGGTTCACTGGACCAACATTTATCAAAACATG CACGCAAGCCTCTCACTTGGGAGAAGAGGATGAAGATAGCTTTGGGAGCTGCTAGAGGGCTAAAATATCTGCACGAGAACAATATTATCCACAGAGATAT GAGGCCAAACAACATTCTCATAACCCATGATCACGAAGCACTGCTTGGAGATTTCGGTCTTGCAAGAACTCAATATGAAGATTCAGAGCAGTCCTGGGAG ACAAGAGTTGTTGGAACTCTTGGATACTTGGCACCAGAATATGCAGAAAGTGGGAAAGTGTCAACCAAGACCGATGTTTATTCTTTCGGGGTGGTGCTAT TGCAGCTGATCACAGGACTACAGATTACAGACAAGAAACTAGCAGGAAAAAGTCTTGTAGGATGGGCAAGGCCACTGCTGAAAGAAAGAAACTACCCAGA TTTAATTGACGAGAGGATCTTAGAGTCCCACGATGTCCACCAACTCTTTTGGATGGTTCGAGTAGCAGAAAAATGCCTCAGCAAGGATCCTCAGAAGCGA TTAACTATGAATAAGGTGGTTTATGCCCTAAACTACATAATAGAAAGCAACTCAACCTGCAGTCTTGGAGAGATAATCCCTGCAAAATCAGATTCACCAA GCAGTGCAGGCTACTCCTATGAATCACAAGATTATTGCGATACAAGTTCTACCGCCGAAACCTTGTCTACTAGCTTTGCTGCGGACAGCATGTCGACCAG TAGCATGGGTGACATGAGCCTATGA
AA sequence Show only first row Show all	>Potri.001G035900.2 pacid=42793215 polypeptide=Potri.001G035900.2.p locus=Potri.001G035900 ID=Potri.001G035900.2.v4.1 annot-version=v4.1 MSGDVQRVVVIQDATREINLIAIRWVLHGFSLNLGDAIILFGAFHQVNNLSFTESETLLGYRFKVESRSMFGVNPKFIAEEVSKRKEECINNVEVIEIAK QCEKEQIEFHVEVRAGPNPKELALKAAKNFRATWVVLDRQMKRDKNYFMENLPCGISRMKHNNTIEQLRGPKSTKVTSETKVKSKSEDKIKVDEKDKGKG VEKDEQEEEKVPYDEMIPGSPKRKRSGRASSSTSTTGYHEQCTSSSTFKTAKQAYMNFQEEEKNTTSTEQDTSGKQSLAASTEFEQREKEAVIPNEQNNI DDWMGGSPKDEVFRNSICSVCKNRRPKIGWKRDFSYAEIHAATEGSSQTKFLSEGGFGSVYRGDLDGLAIAVKQHNGASFQGEKEFKSEVEVLSKVRHEN LVVLLGSCSKGSDRLLVYEYVCNGSLDQHLSKHARKPLTWEKRMKIALGAARGLKYLHENNIIHRDMRPNNILITHDHEALLGDFGLARTQYEDSEQSWE TRVVGTLGYLAPEYAESGKVSTKTDVYSFGVVLLQLITGLQITDKKLAGKSLVGWARPLLKERNYPDLIDERILESHDVHQLFWMVRVAEKCLSKDPQKR LTMNKVVYALNYIIESNSTCSLGEIIPAKSDSPSSAGYSYESQDYCDTSSTAETLSTSFAADSMSTSSMGDMSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56790			Protein kinase superfamily pro...		Potri.001G035900 [exp]	0	1
					Potri.003G184250 [exp]	3.74	0.9116
AT5G44130		FLA13	FASCICLIN-like arabinogalactan...		Potri.013G120600 [exp]	8.00	0.9311
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Potri.006G134900 [exp]	12.96	0.9421
					Potri.002G217100 [exp]	14.49	0.9267
AT1G68400			leucine-rich repeat transmembr...		Potri.006G228400 [exp]	25.33	0.8643
					Potri.014G082700 [exp]	28.98	0.8734
AT2G47930		AGP26, ATAGP26	ARABIDOPSIS THALIANA ARABINOGA...		Potri.014G135100 [exp]	29.25	0.9209
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Potri.006G275900 [exp]	37.41	0.9167
AT2G44930			Plant protein of unknown funct...		Potri.005G008500 [exp]	38.36	0.9114
AT5G44130		FLA13	FASCICLIN-like arabinogalactan...		Potri.019G093300 [exp]	64.00	0.8531	2,Pt-FLA9.2

Compare expression of checked genes

Potri.001G035900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.