Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SUVH3.4,SDG950
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73100 796 / 0 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT5G04940 788 / 0 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT1G17770 503 / 3e-170 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT2G24740 474 / 5e-158 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1) AT4G13460 365 / 1e-117 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT2G35160 352 / 6e-111 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT2G22740 340 / 2e-106 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT2G33290 335 / 5e-106 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT5G13960 300 / 1e-92 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT2G05900 176 / 6e-50 SUVH10, SDG11 SU\(VAR\)3-9 HOMOLOG 10, SET domain protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G188700 [exp] 1250 / 0 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.016G025300 [exp] 682 / 0 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.006G027600 [exp] 667 / 0 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.019G087900 [exp] 482 / 6e-168 AT5G04940 186 / 4e-54 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.010G064300 [exp] 373 / 1e-119 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.008G173100 [exp] 372 / 3e-119 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.003G083100 [exp] 378 / 1e-118 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.002G237950 [exp] 312 / 1e-96 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.014G143900 [exp] 284 / 3e-86 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026137 [exp] 845 / 0 AT1G73100 757 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10029470 [exp] 842 / 0 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10008681 [exp] 832 / 0 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10023714 [exp] 333 / 6e-105 AT4G13460 759 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Lus10011011 [exp] 337 / 7e-103 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10040150 [exp] 327 / 3e-101 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10001011 [exp] 332 / 5e-101 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10031984 [exp] 322 / 3e-100 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10041515 [exp] 315 / 7e-98 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10035115 [exp] 291 / 2e-88 AT5G13960 716 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain CL0178 [poplar] [flax] PUA PF02182 [poplar] [flax] SAD_SRA SAD/SRA domain CL0178 [poplar] [flax] PF05033 [poplar] [flax] Pre-SET Pre-SET motif
Representative CDS sequence Show only first row Show all	>Potri.001G036800.4 pacid=42791225 polypeptide=Potri.001G036800.4.p locus=Potri.001G036800 ID=Potri.001G036800.4.v4.1 annot-version=v4.1 ATGGTAATGGAAGGAGGTGGATCAGGTAATAATTCAACACCTATAATTGATAAGACAAGAGTTTTGGATGTGGAACCACTGCGTACTTTAGTACCGGTGT TTCCTTCTAGTTCCAAAGCACCACCTTTTGGGCCCTACTCATCTGGGTTTGCACCATTTTATCCTTTTAGTGCACCACAGGGTTCACAAGCAACACCTGA CCTTAACCAACAGACACACACCACTCCTGCAGCTCCCCTTCGCTCGTTTAGAGCTACAGAGTCCAACGGGGATGCTTTTGATGGAGAATATGAGTCCTAT GATGGTAGCACGGGCTCAGCTAAGCGGAGACCCAAGTCTTCTTCGCAGAAAAGAGCGAGGAAGATTCAAGATTTGGATTTTACCTTGTCTGTTGATGAGA ATAATTTTGTTGTAGGAGTTAGTTTGTCTGAAAGGGATGATGGTAACAGGGAAGTAGTTCATAGTATACAAATGAGGTTCGATGCACTTAGGAGAAGGCT TAGTCAATTAGAAGATGCTAAGGAATCGCCTGCTGGGATTATTAGGCGGGCGGATCTGAAAGCAGGGAATATTTTGATGACTAAACAGGTGCGAACAAAT ACGAGGAAGAGAATTGGAACAGTTCCTGGAGTTGAGATTGGCGATATTTTCTTTTTCCGAATGGAAATGTGCTTACTGGGATTGCATGCTCCATCCATGG CTGGGATTGACTACATGTCTGTGAGGAATGATTTAGAGGAAGAACCGCTGGCTGTAAGTATCGTTTCGTCTGGTTATTATGATGATGATGCAGAGGATAA GGATGTTTTAATATACAGTGGGCAGGGAGGGGCTGCCAACAAGGATAAAGGAGCAACTGATCAGAAGCTTGAGAGGGGTAACCTTGCATTAGAGAGGAGT TTGCGCCGGGGCAATGAAGTGAGAGTCATTCGGGGTATGAAAGACTCTGTCAATCAAGCGTCAAAGGTCTATGTATATGATGGCCTGTTTAGGATCCAGG AGTCGTGGGTGGAGAAGGCAAAATCTGGTTGCAATATTTTCAAGTATAAGTTGGTTAGAATTCCTGGGCAGCCAGATGCTTTTGGTGTTTGGAAATCAAT TGAGAAGTGGAGGGAAGGGCTTTCCTCAAGGGCTGGACTAATTCTTCCAGATCTCACTTCAGGGGCTGAAAGCGTGCCTGTTGCACTCGTAAACGATGTT GATGAAGAGAAGGGGCCTGCTTACTTCACATATGTCTCCACTGTCAAGTATTCTAAATCATTTAAATTAACACAGCCTGCTTATGGTTGCAACTGTCGAA ATGCATGCCAACCAGGCAATTTGAACTGCTCCTGCATAAGAAAAAATGAAGGTAACTTCCCGTACACTGCCAATGGAGTTTTAGTCTGCCGGGCTCCAAT GATACATGAATGTGGTCCCACGTGTCCATGCTTTCCTAATTGCAAAAATCGGGCATCTCAGACTGGCTTAAAAGCTCGTTTGGAAGTGTTCAAAACAAAG GACAGAGGTTGGGGCCTGCGGTCATGGGATTCTTTTCGTGCGGGTACTTTTATTTGTGAATATGCTGGTGAAGTGATAGAAAAGGTTAGCCAGGTAGGAG AAGGTGAAGGTGATGGTTATGTGTTTGATACCTCCCACGTGTATGAATCTTTCAAGTGGAACTATGAACCTGGGTTAGTAGAGGAGGACGGTTCTATTGA AGCTATCGAGGAACCCAATGTCCCATCTCCCTTGGTCATAAGCTCAAAGAATGTTGGAAATGTAGCTCGATTCATGAATCACAGTTGTTATCCAAATGTT TTCTGGCAGCCAATTATGTACGAAAACAACAATGAATCTTTTATCCACATTGCCTTTTTTGCAATGAGACACATCCCCCCTATGACAGAGTTGACTTTCG ATTATGGGAAATCTTGCTCGGGTGAGGCTGCAGCTGATGGTGGGAGCACATCACGTGGAAGGAGGAAATGTTTATGTGGAGCTCCAATCTGCCGGGGCTA CTTTGGTTGA
AA sequence Show only first row Show all	>Potri.001G036800.4 pacid=42791225 polypeptide=Potri.001G036800.4.p locus=Potri.001G036800 ID=Potri.001G036800.4.v4.1 annot-version=v4.1 MVMEGGGSGNNSTPIIDKTRVLDVEPLRTLVPVFPSSSKAPPFGPYSSGFAPFYPFSAPQGSQATPDLNQQTHTTPAAPLRSFRATESNGDAFDGEYESY DGSTGSAKRRPKSSSQKRARKIQDLDFTLSVDENNFVVGVSLSERDDGNREVVHSIQMRFDALRRRLSQLEDAKESPAGIIRRADLKAGNILMTKQVRTN TRKRIGTVPGVEIGDIFFFRMEMCLLGLHAPSMAGIDYMSVRNDLEEEPLAVSIVSSGYYDDDAEDKDVLIYSGQGGAANKDKGATDQKLERGNLALERS LRRGNEVRVIRGMKDSVNQASKVYVYDGLFRIQESWVEKAKSGCNIFKYKLVRIPGQPDAFGVWKSIEKWREGLSSRAGLILPDLTSGAESVPVALVNDV DEEKGPAYFTYVSTVKYSKSFKLTQPAYGCNCRNACQPGNLNCSCIRKNEGNFPYTANGVLVCRAPMIHECGPTCPCFPNCKNRASQTGLKARLEVFKTK DRGWGLRSWDSFRAGTFICEYAGEVIEKVSQVGEGEGDGYVFDTSHVYESFKWNYEPGLVEEDGSIEAIEEPNVPSPLVISSKNVGNVARFMNHSCYPNV FWQPIMYENNNESFIHIAFFAMRHIPPMTELTFDYGKSCSGEAAADGGSTSRGRRKCLCGAPICRGYFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Potri.001G036800 [exp]	0	1	SUVH3.4,SDG950
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Potri.019G087900 [exp]	1.00	0.9161	SDG907,SUVH3.1
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Potri.001G266700 [exp]	2.82	0.8885
AT5G49840			ATP-dependent Clp protease (.1...		Potri.004G229400 [exp]	3.74	0.9155
AT1G74120			Mitochondrial transcription te...		Potri.018G051600 [exp]	4.89	0.8907
AT5G35370			S-locus lectin protein kinase ...		Potri.002G086500 [exp]	5.09	0.8825
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.008G042300 [exp]	5.47	0.8910
AT4G26450		WIP1	unknown protein		Potri.011G169200 [exp]	6.48	0.8899
AT4G12290			Copper amine oxidase family pr...		Potri.001G118300 [exp]	6.92	0.8705
AT2G22430	HD	ATHB6	homeobox protein 6 (.1)		Potri.007G097100 [exp]	7.14	0.8726
AT3G14470			NB-ARC domain-containing disea...		Potri.019G036850 [exp]	7.93	0.8884

Compare expression of checked genes

Potri.001G036800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.