Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-4CL.3,Ptr4CL3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21240 767 / 0 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G51680 752 / 0 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) AT1G65060 659 / 0 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT3G21230 647 / 0 4CL5 4-coumarate:CoA ligase 5 (.1) AT4G05160 386 / 2e-128 AMP-dependent synthetase and ligase family protein (.1) AT1G62940 350 / 2e-114 ACOS5 acyl-CoA synthetase 5 (.1) AT1G20510 330 / 6e-107 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT5G63380 329 / 3e-106 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 324 / 2e-104 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 322 / 2e-103 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G188500 [exp] 932 / 0 AT3G21240 741 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.006G169700 [exp] 823 / 0 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.018G094200 [exp] 813 / 0 AT3G21240 807 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.019G049500 [exp] 683 / 0 AT1G65060 781 / 0.0 4-coumarate:CoA ligase 3 (.1.2) Potri.001G055700 [exp] 387 / 3e-128 AT1G62940 786 / 0.0 acyl-CoA synthetase 5 (.1) Potri.017G112800 [exp] 379 / 1e-125 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 376 / 1e-124 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.002G012800 [exp] 356 / 1e-116 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 344 / 5e-112 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026143 [exp] 841 / 0 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10008677 [exp] 822 / 0 AT1G51680 834 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10005390 [exp] 815 / 0 AT1G51680 827 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10024123 [exp] 810 / 0 AT3G21240 835 / 0.0 4-coumarate:CoA ligase 2 (.1) Lus10021431 [exp] 383 / 3e-127 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 383 / 3e-127 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10025842 [exp] 350 / 2e-114 AT1G62940 793 / 0.0 acyl-CoA synthetase 5 (.1) Lus10038259 [exp] 346 / 1e-112 AT1G62940 769 / 0.0 acyl-CoA synthetase 5 (.1) Lus10013831 [exp] 343 / 1e-111 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 333 / 1e-107 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G036900.1 pacid=42789165 polypeptide=Potri.001G036900.1.p locus=Potri.001G036900 ID=Potri.001G036900.1.v4.1 annot-version=v4.1 ATGGACGCCATAATGAATTCACAAGAAGAATTCATCTTTCGCTCAAAATTACCAGACATCTACATCCCGAAAAACCTTCCTCTGCATTCATACGTTCTTG AAAACTTGTCTAAGTATTCATCAAAACCTTGCCTGATAAATGGCGCAAACGGAGATGTCTGCACCTATGCTGACGTTGAGCTCACAGCAAGAAGAGTTGC TTCTGGTCTTAACAAGATTGGTATTCAACAAGGTGACGTGATCATGCTCTTCCTACCAAGTTCACCTGAATTCGTGCTTGCTTTCCTAGGCGCTTCACAC AGAGGTGCCATTGTCACCGCTGCCAATCCTTTCTCCACCCCTGCAGAGCTAGCAAAACATGCCAAGGCCTCAAGAGCAAAGCTTTTGATAACACAGGCTT GTTACTACGAGAAGGTTAAAGATTTTGCACGAGAAAGTGATGTTAAGGTCATGTGCGTAGACTCTGCCCCAGATGGGTGCTTGCACTTTTCAGAGCTAAC ACAGGCTGACGAAAATGAAGTGCCCCAGGTCGACTTTAGTCCTGATGATGTTGTAGCATTGCCTTATTCATCAGGGACTACAGGGTTACCAAAAGGGGTC ATGCTAACACACAAAGGGCTAATAACCAGTGTGGCTCAACAAGTAGATGGAGACAATCCTAACCTGTATTTTCACAGTGAAGATGTGATTTTGTGTGTGT TGCCTATGTTCCATATCTATGCTCTGAATTCAATAATGCTTTGTGGGCTGAGAGTTGGTGCCTCGATTTTGATAATGCCAAAGTTTGATATTGGTACTCT GCTGGGATTGATTGAGAAGTACAAGGTATCTATAGCACCAGTTGTTCCACCTGTGATGTTGGCAATTGCTAAGTCACCTGATTTTGACAAGCACGACTTG TCTTCTTTGAGGATGATAAAATCTGGAGGGGCTCCATTGGGCAAGGAACTTGAAGATACTGTCAGAGCTAAGTTTCCTCAGGCCAGACTTGGTCAGGGAT ATGGAATGACCGAGGCAGGACCTGTTCTAGCAATGTGCTTGGCATTTGCCAAGGAACCATTTGACATAAAACCAGGTGCATGTGGGACTGTCGTCAGGAA TGCAGAGATGAAGATTGTTGACCCAGAAACAGGGGCCTCTCTACCGAGGAACCAGCCTGGTGAGATCTGCATCCGGGGTGATCAGATCATGAAAGGATAT CTTAATGACCCTGAGGCAACCTCAAGAACAATAGACAAAGAAGGATGGTTGCACACAGGCGATATCGGCTACATCGATGACGATGATGAGCTTTTCATCG TTGACAGATTGAAGGAATTGATCAAATATAAAGGGTTTCAGGTTGCTCCTGCTGAACTCGAAGCTTTGTTACTAGCCCATCCAGAGATATCCGATGCTGC TGTAGTAGGAATGAAAGATGAGGATGCAGGAGAAGTTCCTGTTGCATTTGTAGTGAAATCAGAAAAGTCTCAGGCCACCGAAGATGAAATTAAGCAGTAT ATTTCAAAACAGGTGATATTCTACAAGAGAATAAAACGAGTTTTCTTCATTGAAGCAATTCCCAAGGCGCCATCAGGCAAAATCCTTAGGAAGAATCTGA GAGAAACGTTGCCAGGCATATAA
AA sequence Show only first row Show all	>Potri.001G036900.1 pacid=42789165 polypeptide=Potri.001G036900.1.p locus=Potri.001G036900 ID=Potri.001G036900.1.v4.1 annot-version=v4.1 MDAIMNSQEEFIFRSKLPDIYIPKNLPLHSYVLENLSKYSSKPCLINGANGDVCTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASH RGAIVTAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQADENEVPQVDFSPDDVVALPYSSGTTGLPKGV MLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGASILIMPKFDIGTLLGLIEKYKVSIAPVVPPVMLAIAKSPDFDKHDL SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGY LNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLAHPEISDAAVVGMKDEDAGEVPVAFVVKSEKSQATEDEIKQY ISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLRETLPGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.001G036900 [exp]	0	1	Pt-4CL.3,Ptr4CL3
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.007G016400 [exp]	1.00	0.9661	CAld5H/F5H4,Pt-FAH1.4
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Potri.015G142000 [exp]	2.82	0.9418
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.012G006400 [exp]	3.46	0.9454	OMT1.1
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.014G114700 [exp]	3.46	0.9421	Pt-SAM1.1
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Potri.008G099300 [exp]	4.89	0.9099	AdoMet1,SAMS.2
AT4G13930		SHM4	serine hydroxymethyltransferas...		Potri.001G320400 [exp]	5.91	0.9327
AT1G17120		CAT8	cationic amino acid transporte...		Potri.001G378500 [exp]	6.48	0.9057	Pt-CAT8.3
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.002G189200 [exp]	6.70	0.9310
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Potri.019G038268 [exp]	6.92	0.9357
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.004G007600 [exp]	7.41	0.9187

Compare expression of checked genes

Potri.001G036900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.