Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23570 96 / 1e-20 SGS3, ATSGS3 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G037101 [exp] 378 / 7e-125 AT5G23570 334 / 4e-106 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G187800 [exp] 299 / 4e-96 AT5G23570 226 / 4e-67 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G188350 [exp] 230 / 9e-66 AT5G23570 269 / 7e-78 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G188100 [exp] 214 / 5e-62 AT5G23570 225 / 1e-64 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G187900 [exp] 166 / 1e-44 AT5G23570 228 / 7e-66 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.T045700 [exp] 106 / 4e-24 AT5G23570 604 / 0.0 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.018G137400 [exp] 103 / 2e-23 AT5G23570 603 / 0.0 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G021000 [exp] 76 / 2e-14 AT5G23570 439 / 3e-147 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G188000 [exp] 69 / 4e-12 AT5G23570 220 / 3e-64 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019214 [exp] 86 / 1e-17 AT5G23570 515 / 2e-179 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Lus10004302 [exp] 85 / 2e-17 AT5G23570 517 / 4e-180 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Lus10026697 [exp] 66 / 2e-12 AT5G23570 110 / 2e-28 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Lus10026103 [exp] 46 / 6e-05 AT1G79690 1136 / 0.0 nudix hydrolase homolog 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G037000.1 pacid=42790809 polypeptide=Potri.001G037000.1.p locus=Potri.001G037000 ID=Potri.001G037000.1.v4.1 annot-version=v4.1 ATGGCAATAGAACCCGCCTTCTTTGATCCTTTTATTAACAATGATGGTTACTTTCCATCTTTCTTGCAGCAAAATGATTCAGAAGATGAAATTTTACGTG CTCTGTTAGATGCTCAATTTGCTGAAGAATTACAGTTCCAAGAGGCTCTAAAGGCTTCTTTGATCAGTTGTCAGATGCCAAGCAATGTGCCATCATCAAC TCCGTCCAAGACCAACATGGAAGCAATTTCAGGACACAAGATTGAACCACCGCCGCGAGTGCTAGAAAAGGGTGAACCATCTCTATGTTCCTGTGACATG TGCCTGGAAAGGAAGGAAAAGTATCAGATCATTAAAAATGAGAGCTCTGGTCTGATATTTTGCTTAGGCTGCAGCAAAACTTTGGAACTTTTAGAAAAGG AATGGTGCAGCCAAGAGTTGAGTATGGACACGAGTTCTAGAAATGACACTGGCAAGTCTCTCACTGTTGATGCCAGTAATGGTAATCCGACACCAAAGAC TGAAGCTGAATCAGTATGTCCTGGTGCAGTGAAAGTTATCAGTCTCAACTCAGCACCAGATGAAGGTGAGTTGGGGTTTAATGAAAGTAAGCATGTGAAA ATGGCTGAAACCATTGCCGCAAAACAGCAGGGTCCACAGAATCCTAATCCTAAAGCATGGGGACATACAGACATGGATCAGAATCAAGCCATCACAAGTA ATGCTGATTCTGAGATGGCAGTTGACAGAGGAAAAGGAGGCTTCCGAACATGCCCCAGATATTTCAAGAGCACTGCTGCACGATCTCTAGATAGGTCATG TGTGGGACAAATAAGTAACACGCGAGGAGGTAACCCCATGCTGAAATGTGAAATGAGATCACACCAAGAAATGGCTGTGAACCAGATCAGGAAAACGACT GAGGACAGTCACCAGTTTATCTGGATGAACAACAAGGTAGCTGAAGAACAAAGGCACCTAAAACTTCTTGAAGAATCAAATGTCATAATGAGGGAGAGGC TGGAAAATGCAATGAGGGAAATTGATGTTTTGAGACAGAAAATCAAATTGCAGCATGAACAGAACAAGGAAGAGATGGACTTTCAAGAACAATTTTTCAA GGACCAAATAAAGATTATTCTTGAAAAAAGAGATAAAGAGAGCCCAGATGAGGAGGAGCATGAAAACGTCCATGAATCCAATGAAAGTCCTAGGAATACA GAGGATGACAAATACGGAGTGCAGGAAACTGCCATGTCCAGAGCCAGGTCCAGATTCATGTCCAGAGTGAATAAAAAGAAAGAGAAGGAAGTAGCTGAGA AAGGAAAGCTAGCAGAGGAACGAGGAGGACAAGATGAAGGCAAGGAAGAGGAAGAGGTCAGTCTAGGAAATCTGTATGTGAAACTCATGGAGAATTCTCT TGAAACAGAAGACCCCAGTAATGTTTATGATTCTGTGATGGAGCAGAAAAGAAGATTGAGGAGCATGCGGGCTGAGAGACAAAGGCTTCAGGCTGCATTA AGGTTGAAGTTTTAA
AA sequence Show only first row Show all	>Potri.001G037000.1 pacid=42790809 polypeptide=Potri.001G037000.1.p locus=Potri.001G037000 ID=Potri.001G037000.1.v4.1 annot-version=v4.1 MAIEPAFFDPFINNDGYFPSFLQQNDSEDEILRALLDAQFAEELQFQEALKASLISCQMPSNVPSSTPSKTNMEAISGHKIEPPPRVLEKGEPSLCSCDM CLERKEKYQIIKNESSGLIFCLGCSKTLELLEKEWCSQELSMDTSSRNDTGKSLTVDASNGNPTPKTEAESVCPGAVKVISLNSAPDEGELGFNESKHVK MAETIAAKQQGPQNPNPKAWGHTDMDQNQAITSNADSEMAVDRGKGGFRTCPRYFKSTAARSLDRSCVGQISNTRGGNPMLKCEMRSHQEMAVNQIRKTT EDSHQFIWMNNKVAEEQRHLKLLEESNVIMRERLENAMREIDVLRQKIKLQHEQNKEEMDFQEQFFKDQIKIILEKRDKESPDEEEHENVHESNESPRNT EDDKYGVQETAMSRARSRFMSRVNKKKEKEVAEKGKLAEERGGQDEGKEEEEVSLGNLYVKLMENSLETEDPSNVYDSVMEQKRRLRSMRAERQRLQAAL RLKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.001G037000 [exp]	0	1
AT4G16860		RPP5, RPP4	recognition of peronospora par...		Potri.019G097300 [exp]	2.00	0.8777
AT4G01550	NAC	ANAC069, NTM2	NAC with Transmembrane Motif 2...		Potri.002G181800 [exp]	3.16	0.8553
AT4G11170			Disease resistance protein (TI...		Potri.019G097580 [exp]	3.46	0.8701
AT3G17380			TRAF-like family protein (.1)		Potri.014G055400 [exp]	6.24	0.8052
AT4G16860		RPP5, RPP4	recognition of peronospora par...		Potri.019G098800 [exp]	6.24	0.8674
AT4G11170			Disease resistance protein (TI...		Potri.019G095932 [exp]	6.92	0.8582
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Potri.019G095866 [exp]	8.94	0.8361
AT1G29690		CAD1	constitutively activated cell ...		Potri.004G064000 [exp]	9.79	0.7683
AT2G04515			unknown protein		Potri.014G166900 [exp]	10.00	0.7835
					Potri.017G077100 [exp]	10.81	0.8253

Compare expression of checked genes

Potri.001G037000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.