Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23570 334 / 4e-106 SGS3, ATSGS3 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) AT3G22430 52 / 1e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G188350 [exp] 558 / 0 AT5G23570 269 / 7e-78 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G188100 [exp] 530 / 0 AT5G23570 225 / 1e-64 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G187900 [exp] 498 / 2e-169 AT5G23570 228 / 7e-66 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.T045700 [exp] 414 / 6e-137 AT5G23570 604 / 0.0 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.018G137400 [exp] 413 / 2e-136 AT5G23570 603 / 0.0 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.001G037000 [exp] 379 / 6e-125 AT5G23570 97 / 3e-21 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G187800 [exp] 347 / 5e-113 AT5G23570 226 / 4e-67 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G021000 [exp] 320 / 6e-101 AT5G23570 439 / 3e-147 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G188000 [exp] 316 / 3e-100 AT5G23570 220 / 3e-64 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004302 [exp] 332 / 1e-107 AT5G23570 517 / 4e-180 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Lus10019214 [exp] 311 / 1e-99 AT5G23570 515 / 2e-179 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Lus10011024 [exp] 232 / 8e-65 AT5G41150 1233 / 0.0 ULTRAVIOLET HYPERSENSITIVE 1, Restriction endonuclease, type II-like superfamily protein (.1.2) Lus10026697 [exp] 61 / 2e-10 AT5G23570 110 / 2e-28 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Lus10041203 [exp] 49 / 2e-06 AT3G22430 186 / 2e-57 unknown protein Lus10006278 [exp] 51 / 3e-06 AT3G22430 132 / 2e-32 unknown protein Lus10020567 [exp] 48 / 1e-05 AT3G22430 129 / 8e-33 unknown protein Lus10026103 [exp] 44 / 0.0004 AT1G79690 1136 / 0.0 nudix hydrolase homolog 3 (.1) Lus10009217 [exp] 44 / 0.0006 AT1G15910 639 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF03468 [poplar] [flax] XS XS domain
Representative CDS sequence Show only first row Show all	>Potri.001G037101.1 pacid=42792766 polypeptide=Potri.001G037101.1.p locus=Potri.001G037101 ID=Potri.001G037101.1.v4.1 annot-version=v4.1 ATGGCAACAGAACCAGCCTTCTTTGATCTTCCTATTAACAATGATGAAAATTTACGTGCTCTGTTAGAAGCTGGATTTGCTGAAGAATTACAGTTCCAAG AGGCTCCACAGGCTTCTTTGATCAGTTGTCAGATGCCAAGCATTGTGTCATCATCAACTCCGTCCAAGACCAACATGGAAGCAATTTCAGGACACAAGAT TGAACCACCACCGCGAGTGATAGAAAAGGGTGAACCATCTCTAAGTTCCTGTGACATGTGCCTGGAAAGGAAGGAAAAGTATCAGATCATTAAAAATGAG AGCTCTGGTCAGATATTTTGCTTACGCTGCAGCAAAACTTTGGAACTGTCAAAAAAAGAATGCTGCAGCAAAGAGTTGAGTATGGATATGGGTTCTAGAA ATGACACTGCCAAGGGTGCAGTGAAAGCTGTCAGTCTCGACTCAGCACCAGATGAAGGTGAGTTGGGGTTTAATGAAAGTAAGCATAGGAAAGTGGCTGA AACCATTGTCGCAAAACAGCAGGGTCCACAGAGTCCTAATCCTAAAGCATGGGAACATACAGACGTGGATAAGAATCCAGCCATTCCAAGTAATGCTGAT TCTGAGATGCCAGCTGACAGAGGAAATGGAGGCTTCCAAACACGCTCCAGATATTTCAAGAGCACTGCTGCACGATCTTTAGATAGGCCGCCTCTGGGAA AAATAAGTAATACGCGAGGAGGTATTGATCGTACTCCAGGAAAGGGTTCAGACGCTGGCCAAGAAAGAGTTGCAAATGGTATTCAGAATAATCTTATTGA CGTGGTGGATGATCTTTCTGACTCTGATGCTTTTGATGATAATGATGAATCTGGTTCTGATTCCGATCCATCTGAAAAGAGCCCTGAGAATACCAAGAAG AGACCACTGTTGAAGGAATTCTTTGGGATATTGGAGAAATTGGCACCTGCGGATGTCAATGAACCTACCAGGCAGTGGCACTGTCCTGTATGCCAAGGAG GTTCTGGTGCTAACAAATGGTACCAAGGCCTGCGGGCCCTGATATTACATGCCAAAACCAAACTAGGAAAAAGGGTGAAGCTCCACCAGGAATTCGCACA GCTGTTGGAAGAGAAGTTATGCACTAAGGGAACTTCTGACATTCCTGCTGCCAAAGTGTTGAGTAAATGGAGAGGTATAAAAGATGAGAAGAAAAATGAT GAGATTGTTTGGCCTCCTATGGTCATCATTAGAAATACTAGCCTTAAGAAAGATGAGAACAATAAGTGGGTTGGCATGACAGGCAAAGAGCTGCTCGACT CCTTCAGCTCATATGACGCTATCATGAAGGTTCAACAAGCTTACAATCGGCAGGGACATCGTGGGATTAGTGTTTTGATTTTTGAGAGCTCAGCAAGGGG CTTTTTAGAGGCAGAGCGCCTGCATAAGCATTTTGAAGAACAAGGAACAGGTAGAGATACTTGTAATCATCGTCCAGTCTACTTCCTACCAAATGAAGAG CGCCAACTTCATGGTTTCATGGCAATGAAAGAAGACGTGGATTGTTTCAACCAGTATTCAAAAGGTAAGCCCAAGCTGAGATGTGAAATGAGATCATACC AAGAAATGGTTGTGAACCAGATCAGGAAAATGAGCGAGGACAGCCACCAGCTTATCTGGATGAACAACAAGCTAGCTGAAGAACAAAGGCACCGAAAACT TCTTGAAGAATTTAATGTCATGATGGGGGAGAGGCTGGAAAATGCAAAAAAGGAAATTGATATTTTGAGACAGAAAATCAAATTACAGCATGAACAGAAC ATGGAAGAGACGGACTTTCAAGAACAATTTTTCAAGGACCAAATAAAGATTATTCTTGAAGAAAGAGATAAAGAGGGAGGGGATCCTCAGAGCCCAGACG AGGAGTAA
AA sequence Show only first row Show all	>Potri.001G037101.1 pacid=42792766 polypeptide=Potri.001G037101.1.p locus=Potri.001G037101 ID=Potri.001G037101.1.v4.1 annot-version=v4.1 MATEPAFFDLPINNDENLRALLEAGFAEELQFQEAPQASLISCQMPSIVSSSTPSKTNMEAISGHKIEPPPRVIEKGEPSLSSCDMCLERKEKYQIIKNE SSGQIFCLRCSKTLELSKKECCSKELSMDMGSRNDTAKGAVKAVSLDSAPDEGELGFNESKHRKVAETIVAKQQGPQSPNPKAWEHTDVDKNPAIPSNAD SEMPADRGNGGFQTRSRYFKSTAARSLDRPPLGKISNTRGGIDRTPGKGSDAGQERVANGIQNNLIDVVDDLSDSDAFDDNDESGSDSDPSEKSPENTKK RPLLKEFFGILEKLAPADVNEPTRQWHCPVCQGGSGANKWYQGLRALILHAKTKLGKRVKLHQEFAQLLEEKLCTKGTSDIPAAKVLSKWRGIKDEKKND EIVWPPMVIIRNTSLKKDENNKWVGMTGKELLDSFSSYDAIMKVQQAYNRQGHRGISVLIFESSARGFLEAERLHKHFEEQGTGRDTCNHRPVYFLPNEE RQLHGFMAMKEDVDCFNQYSKGKPKLRCEMRSYQEMVVNQIRKMSEDSHQLIWMNNKLAEEQRHRKLLEEFNVMMGERLENAKKEIDILRQKIKLQHEQN MEETDFQEQFFKDQIKIILEERDKEGGDPQSPDEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.001G037101 [exp]	0	1
AT4G16860		RPP5, RPP4	recognition of peronospora par...		Potri.019G098800 [exp]	4.89	0.8720
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.006G115700 [exp]	7.21	0.7666
AT4G12010			Disease resistance protein (TI...		Potri.019G097100 [exp]	7.74	0.8672
AT5G17680			disease resistance protein (TI...		Potri.019G098900 [exp]	10.67	0.8439
					Potri.019G002628 [exp]	12.32	0.8314
AT5G17680			disease resistance protein (TI...		Potri.019G098500 [exp]	13.22	0.8371
AT4G11170			Disease resistance protein (TI...		Potri.019G097580 [exp]	13.49	0.8001
AT5G36930			Disease resistance protein (TI...		Potri.019G001314 [exp]	19.44	0.7759
AT5G17680			disease resistance protein (TI...		Potri.019G098700 [exp]	22.04	0.8186
AT1G63860			Disease resistance protein (TI...		Potri.019G097720 [exp]	22.24	0.8128

Compare expression of checked genes

Potri.001G037101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.