Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24530 235 / 2e-74 unknown protein AT4G31440 219 / 3e-68 unknown protein AT2G14850 147 / 9e-42 unknown protein AT4G33890 145 / 2e-40 unknown protein AT5G67410 109 / 1e-27 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G187400 [exp] 593 / 0 AT2G24530 229 / 7e-72 unknown protein Potri.018G005700 [exp] 290 / 2e-95 AT2G24530 443 / 8e-155 unknown protein Potri.006G274800 [exp] 283 / 7e-93 AT2G24530 415 / 1e-143 unknown protein Potri.001G296300 [exp] 171 / 4e-50 AT4G33890 325 / 2e-110 unknown protein Potri.009G090400 [exp] 169 / 3e-49 AT4G33890 318 / 2e-107 unknown protein Potri.009G090500 [exp] 168 / 6e-49 AT4G33890 305 / 4e-102 unknown protein Potri.001G296200 [exp] 162 / 1e-46 AT4G33890 295 / 3e-98 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042444 [exp] 234 / 3e-74 AT2G24530 386 / 9e-133 unknown protein Lus10020146 [exp] 228 / 1e-71 AT2G24530 346 / 4e-117 unknown protein Lus10026942 [exp] 228 / 2e-71 AT2G24530 351 / 7e-119 unknown protein Lus10026225 [exp] 203 / 3e-62 AT2G24530 347 / 1e-117 unknown protein Lus10002119 [exp] 144 / 9e-40 AT4G33890 297 / 2e-99 unknown protein Lus10011422 [exp] 141 / 2e-38 AT2G14850 278 / 5e-92 unknown protein Lus10011423 [exp] 139 / 3e-38 AT4G33890 294 / 3e-98 unknown protein Lus10002120 [exp] 65 / 7e-13 AT2G14850 112 / 2e-31 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12767 [poplar] [flax] SAGA-Tad1 Transcriptional regulator of RNA polII, SAGA, subunit
Representative CDS sequence Show only first row Show all	>Potri.001G037500.1 pacid=42790869 polypeptide=Potri.001G037500.1.p locus=Potri.001G037500 ID=Potri.001G037500.1.v4.1 annot-version=v4.1 ATGCAACCGTCATCTCAGCATTCGCGGGTAAATCTCGCGGAGTTGAAAGTTCAGATAGTGAAGAGAATTGGGGCAGACAGGTCGAAGTTGTACTTCTATT ATTTGAATGGATTTTTGAGTCTGAAGCTGAGCAAGGTTGAGTTTAATAAGCTCTGTGTTTCTGTTATTGGGAAAGATAATGTTCTGTTACATAATCAATT TATACGTTCGATTTTGAAAAATGCTTGTAATGCCACTGTCCCGCCGCCGCTGCCAAGTCCTGATAAGGAGGTTCCTACATCTGCAAGTGATTGGTCCTAT TCTTATCCGAATGGGAAGGCGGATTTTTCTTCTCATCAGTCAACCATTACAGATGATAATATAGCTTCAGAAGATGGAATACAGAAGCTGGTGCAGCATC ATCAAGAAGGGGAAGTTTCCCTTCAGCGTCCTGCAAAATTATCACAAATAAAGCAGTCAACTGATGGTTTGGTATCTGTACATAGTAAAGAACAGAGTGA AATATCTGAGATATCTACTCCACTTCAGGCACCACTTGGAATTCCATTTTGCATCGTGAGTGCAGGTGGTTCCCGTGGGCCTTTGACTTTAGCAAGCAAT GACAGATGTGCTAGCTCGTATGATAGTGGTGGATTGCTGGATACACAGACACTGAGAGAACAAATGCAGCAGATTGCAGCAGCGCATGGCCTTGATGGTG TATCAATGGACTCTGCCAATTTGCTGAACAGCAGCTTGGATGCTTACTTAAAAAGGTTGATCAAGTCCTGCACTGAACTCATTAATAGAAGGCGTGGATG TGATTTGACAAAAAATAATTCCCAGGAGAACCGTTCTGAGGGGAAGCTTGTTAATGGCTTTCTTCCAGGCCATCGTTTTCAGGTGCAAAGTAGCAATAGG ATTTTAGGTGGAATGCAAGAACAGAGATCCCACTTCCTGATATCTTTACTGGATTTGAAAGTTTCAATGGAGCTTAACCCACAGCAGCTTGGAGAAGACT GGCCCTTGCTGCTGGAGAAAATATGCACGCGCCCATCAGAAGAATGA
AA sequence Show only first row Show all	>Potri.001G037500.1 pacid=42790869 polypeptide=Potri.001G037500.1.p locus=Potri.001G037500 ID=Potri.001G037500.1.v4.1 annot-version=v4.1 MQPSSQHSRVNLAELKVQIVKRIGADRSKLYFYYLNGFLSLKLSKVEFNKLCVSVIGKDNVLLHNQFIRSILKNACNATVPPPLPSPDKEVPTSASDWSY SYPNGKADFSSHQSTITDDNIASEDGIQKLVQHHQEGEVSLQRPAKLSQIKQSTDGLVSVHSKEQSEISEISTPLQAPLGIPFCIVSAGGSRGPLTLASN DRCASSYDSGGLLDTQTLREQMQQIAAAHGLDGVSMDSANLLNSSLDAYLKRLIKSCTELINRRRGCDLTKNNSQENRSEGKLVNGFLPGHRFQVQSSNR ILGGMQEQRSHFLISLLDLKVSMELNPQQLGEDWPLLLEKICTRPSEE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24530			unknown protein		Potri.001G037500 [exp]	0	1
AT3G07720			Galactose oxidase/kelch repeat...		Potri.014G168300 [exp]	1.73	0.8356
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050500 [exp]	2.64	0.8500
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050400 [exp]	4.69	0.8052
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Potri.002G221500 [exp]	8.36	0.8194
AT5G05550	Trihelix		sequence-specific DNA binding ...		Potri.008G071300 [exp]	11.31	0.8151
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050240 [exp]	15.81	0.8205
AT3G59800			unknown protein		Potri.017G010100 [exp]	16.52	0.7981
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Potri.001G170200 [exp]	20.00	0.8094
AT5G08170		ATAIH, EMB1873	EMBRYO DEFECTIVE 1873, AGMATIN...		Potri.015G055300 [exp]	20.49	0.7984
AT5G47940			unknown protein		Potri.009G060000 [exp]	24.24	0.7796

Compare expression of checked genes

Potri.001G037500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.