Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RAD23.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79650 456 / 4e-161 AtAO1, RAD23B, RAD23 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) AT1G16190 435 / 9e-153 RAD23A RADIATION SENSITIVE23A, Rad23 UV excision repair protein family (.1) AT5G38470 350 / 5e-119 RAD23D RADIATION SENSITIVE23D, Rad23 UV excision repair protein family (.1.2) AT3G02540 273 / 2e-88 RAD23C, RAD23-3 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) AT5G16090 81 / 4e-18 unknown protein AT1G31340 45 / 1e-05 NEDD8, ATRUB1, RUB1 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) AT2G35635 45 / 1e-05 UBQ7, RUB2 RELATED TO UBIQUITIN 2, ubiquitin 7 (.1) AT2G36170 45 / 1e-05 Ubiquitin supergroup;Ribosomal protein L40e (.1) AT3G52590 45 / 1e-05 HAP4, ERD16, UBQ1, EMB2167 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) AT5G37640 46 / 2e-05 UBQ9 ubiquitin 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G186600 [exp] 407 / 8e-142 AT1G79650 474 / 4e-168 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Potri.017G114000 [exp] 285 / 2e-93 AT3G02540 369 / 9e-126 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Potri.004G100700 [exp] 280 / 1e-91 AT3G02540 476 / 8e-168 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Potri.010G126200 [exp] 278 / 8e-91 AT5G38470 367 / 1e-125 RADIATION SENSITIVE23D, Rad23 UV excision repair protein family (.1.2) Potri.008G119700 [exp] 229 / 6e-72 AT5G38470 380 / 3e-131 RADIATION SENSITIVE23D, Rad23 UV excision repair protein family (.1.2) Potri.016G077000 [exp] 45 / 7e-06 AT3G52590 194 / 1e-65 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.015G007100 [exp] 45 / 9e-06 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.012G024300 [exp] 45 / 9e-06 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.016G077200 [exp] 45 / 9e-06 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026110 [exp] 466 / 1e-164 AT1G79650 519 / 0.0 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Lus10041465 [exp] 281 / 4e-92 AT3G02540 494 / 4e-175 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10034307 [exp] 283 / 1e-91 AT3G02540 493 / 1e-173 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10034308 [exp] 280 / 1e-91 AT3G02540 491 / 7e-174 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10008710 [exp] 218 / 4e-70 AT1G79650 248 / 2e-82 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Lus10041464 [exp] 195 / 2e-58 AT3G02540 411 / 6e-142 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10020933 [exp] 59 / 2e-10 ND 64 / 6e-13 Lus10008873 [exp] 45 / 1e-05 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10030894 [exp] 45 / 2e-05 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10030595 [exp] 45 / 2e-05 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family CL0214 [poplar] [flax] UBA PF00627 [poplar] [flax] UBA UBA/TS-N domain CL0214 [poplar] [flax] PF09280 [poplar] [flax] XPC-binding XPC-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G038000.1 pacid=42788985 polypeptide=Potri.001G038000.1.p locus=Potri.001G038000 ID=Potri.001G038000.1.v4.1 annot-version=v4.1 ATGAAGCTCACCGTCAAGACACTGAAAGGCAGCCATTTCGAAATTAAGGTTCAACCCACCGACACTGTAATGGGTGTAAAGAAGAATATCGAAGACGTGC AAGGAAAAGACAATTACCCATGTGGACAACAATTGTTGATTCATAATGGGAAAGTCTTGAAAGATGAGACTACTTTAGTTGATAATAAGGTTACCGAAGA TGGTTTTCTTGTTGTCATGCTTAGCAAGAGTAAAACAGCCGCAGCTGGGACTTCATCCACCCAGCCTGTTTCTACACCACCTACCACCACACCAACTTCA AATTCGACTCCTGATGCTCCCGCACCTGATGCTCAAGCACCGGCCTCAAAGAGTGCATCTGCTTCTGACACAGCAACAGCCAATGCACAGAGTGATACCT ATGGTCAAGCTGCTTCCAATTTAGTTGCTGGCAGTAGTTTGGAGCAGACTATTCAGCAAATAATGGATATAGGTGGTGGAAACTGGGACAAAGAAACAGT TACTCGTGCACTTCGAGCTGCCTATAATAACCCAGAGCGGGCAGTGGACTACTTGTACTCTGGCATTCCAGAAACAGCAGAAGTTGCTGTCCCAGTGGCT CGGTTTCCTGCAGATCAGGGCATTGAAACAGGTGCAGCTCCGGCAGCACCTGCACTTGCACCAGGAGGACCTAATTCTTCTCCATTGAATATGTTTCCTG AGACACTTTCTGGTGGTGGAGGCGACGCCGGCCTCGTACTTGGCTCTCTTGATTTCCTTAGAAACAATCAACAATTTCAAGCATTGCGTTCAATGGTTCA AGCAAATCCACAAATCTTGCAGCCCATGCTCCAGGAGCTTGGAAAGCAAAACCCCCAGCTTTTAAGAATGATTCAAGAGCATAATGCAGAGTTTCTTCAG TTAATAAATGAACCTCTTGATGGTTCTGAAGGGGATATATTCGATCAACCTGACCAAGATATGCCCCATGCTATCAATGTGACCCCAGCTGAACAAGAGG CTATTGAACGGCTTGTGGCAATGGGATTCGATAGAGCCCTTGTCATTGAGGCATTTTTGGCTTGTGATCGCAACGAGGAGCTGGCAGCCAACTATCTACT GGAAAATGGTGCAGATTTTGAAGATTGA
AA sequence Show only first row Show all	>Potri.001G038000.1 pacid=42788985 polypeptide=Potri.001G038000.1.p locus=Potri.001G038000 ID=Potri.001G038000.1.v4.1 annot-version=v4.1 MKLTVKTLKGSHFEIKVQPTDTVMGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVDNKVTEDGFLVVMLSKSKTAAAGTSSTQPVSTPPTTTPTS NSTPDAPAPDAQAPASKSASASDTATANAQSDTYGQAASNLVAGSSLEQTIQQIMDIGGGNWDKETVTRALRAAYNNPERAVDYLYSGIPETAEVAVPVA RFPADQGIETGAAPAAPALAPGGPNSSPLNMFPETLSGGGGDAGLVLGSLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQNPQLLRMIQEHNAEFLQ LINEPLDGSEGDIFDQPDQDMPHAINVTPAEQEAIERLVAMGFDRALVIEAFLACDRNEELAANYLLENGADFED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Potri.001G038000 [exp]	0	1	RAD23.1
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Potri.003G186600 [exp]	1.41	0.7979	RAD23.2
AT4G23620			Ribosomal protein L25/Gln-tRNA...		Potri.001G097801 [exp]	3.60	0.8044
AT5G14600			S-adenosyl-L-methionine-depend...		Potri.018G120500 [exp]	5.47	0.7521
AT3G03960			TCP-1/cpn60 chaperonin family ...		Potri.019G034200 [exp]	6.48	0.7488
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Potri.015G062700 [exp]	6.70	0.7744
AT1G24310			unknown protein		Potri.010G059100 [exp]	8.77	0.6733
AT5G47455			unknown protein		Potri.001G333800 [exp]	11.22	0.7699
AT1G12830			unknown protein		Potri.017G061400 [exp]	15.87	0.7492
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Potri.011G143100 [exp]	21.81	0.7119	SR45.1
AT4G36420			Ribosomal protein L12 family p...		Potri.007G019100 [exp]	22.20	0.7203

Compare expression of checked genes

Potri.001G038000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.