Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16180 585 / 0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) AT3G06170 437 / 3e-152 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT3G24460 152 / 7e-42 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT2G33205 149 / 2e-40 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT4G13345 142 / 2e-38 MEE55 maternal effect embryo arrest 55, Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G186500 [exp] 628 / 0 AT1G16180 587 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Potri.008G201900 [exp] 413 / 9e-143 AT3G06170 605 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.018G076000 [exp] 142 / 2e-38 AT3G24460 622 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.003G174200 [exp] 127 / 2e-32 AT2G33205 553 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026111 [exp] 593 / 0 AT1G16180 667 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Lus10008709 [exp] 590 / 0 AT1G16180 670 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Lus10034023 [exp] 443 / 2e-154 AT3G06170 648 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10004430 [exp] 429 / 2e-148 AT3G06170 625 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10017728 [exp] 129 / 3e-33 AT3G24460 575 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10033091 [exp] 124 / 2e-31 AT3G24460 562 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10011768 [exp] 103 / 2e-24 AT2G33205 457 / 2e-160 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10023690 [exp] 101 / 4e-23 AT2G33205 438 / 3e-152 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03348 [poplar] [flax] Serinc Serine incorporator (Serinc)
Representative CDS sequence Show only first row Show all	>Potri.001G038100.1 pacid=42788915 polypeptide=Potri.001G038100.1.p locus=Potri.001G038100 ID=Potri.001G038100.1.v4.1 annot-version=v4.1 ATGTGGGCAGCTTCTTGCCTGGCGTCATGCTGCGCTGCCTGCGCGTGTAGTGCATGTACGACTGTAGTATCTGGGATTAGCAGACGATCCGCCAGGATCG CCTACTGCGGTCTCTTTGCTTTGTCTTTAATCGTTTCCTGGATTCTCCGAGAAGTTGCGGCTCCTCTCATGGAACAAATCCCTTGGATTAATCATTTTCA TAAGACGCCGGATAGGGAATGGTTTGAGACAGACGCAGTTTTGCGTGTTAGTCTGGGGAATTTTCTTTTTTTCACTATATTGGCTATTATGATGGTTGGT GTGAAGAATCAGAAGGACCCACGTGATAGTTTGCACCATGGCGGATGGATGGCGAAAGTTGTTTGTTGGTGTCTTTTGGTGATCTTCATGTTTTTCCTTC CGAATGAGATTGTCAGCTTCTACGAGTCAATTTCCAAATTTGGCTCAGGATTGTTTCTTCTTGTTCAAGTTGTGCTTTTGTTGGATTTCGTTCATGGATG GAATGACAAATGGGTTGGATATGATGAACAGTTCTGGTATGCCGCATTATTTGCTGTGTCATTTGTCTGTTATGTGGGAACATTTGCCTTCTCAGGACTT CTCTTTCATTGGTTCACTGCATCTGGACAGGACTGTGGATTAAACACTTTCTTTATTGTTATGACCCTGATCTTCGCGTTTGTTTTTGCTATCGCTGCAC TACACCCTGCAGTAAATGGAAGTGTTTTGCCTGCTTCAGTTATATCCTTGTATTGCATGTACCTATGCTATAGCGGACTTTCCAGCGAACCAAGGGAATA TGAGTGCAATGGTCTTCACAGGCATTCAAAAGCTGTTTCTACTAGTACTCTTACCATTGGTCTGCTTACAACTGTTCTATCTGTAGTCTATTCTGCTGTC CGTGCTGGATCCTCTACCACCCTGCTCTCCCCACCAAGTTCACCCCATGCTGGTGCCGACAAACCTTTGCTTCCACTGGACAACAAGCCAAGTGAGAAAG AAGAAAAGGAGAAGGCTAAGCCAGTCACATATTCCTATTCCTTCTTCCACATCATCTTTTCTCTTGCGAGTATGTACTCTGCAATGCTTTTGACTGGATG GTCAACCTCGGTAGGGGAGAGTGGAAAGCTGGTAGATGTGGGGTGGCCCTCTGTATGGGTTCGTATTTTGACTGGGTGGGCAACTGCAGGTCTCTACATC TGGTCTCTGGTTGCTCCTATTCTGTTCCCAGACAGGGAGTTCTGA
AA sequence Show only first row Show all	>Potri.001G038100.1 pacid=42788915 polypeptide=Potri.001G038100.1.p locus=Potri.001G038100 ID=Potri.001G038100.1.v4.1 annot-version=v4.1 MWAASCLASCCAACACSACTTVVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEQIPWINHFHKTPDREWFETDAVLRVSLGNFLFFTILAIMMVG VKNQKDPRDSLHHGGWMAKVVCWCLLVIFMFFLPNEIVSFYESISKFGSGLFLLVQVVLLLDFVHGWNDKWVGYDEQFWYAALFAVSFVCYVGTFAFSGL LFHWFTASGQDCGLNTFFIVMTLIFAFVFAIAALHPAVNGSVLPASVISLYCMYLCYSGLSSEPREYECNGLHRHSKAVSTSTLTIGLLTTVLSVVYSAV RAGSSTTLLSPPSSPHAGADKPLLPLDNKPSEKEEKEKAKPVTYSYSFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRILTGWATAGLYI WSLVAPILFPDREF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16180			Serinc-domain containing serin...		Potri.001G038100 [exp]	0	1
AT4G37210			Tetratricopeptide repeat (TPR)...		Potri.005G130800 [exp]	1.00	0.9065
					Potri.003G149300 [exp]	3.16	0.8861
AT3G21865		PEX22	peroxin 22 (.1)		Potri.007G121600 [exp]	3.87	0.8382
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Potri.011G086500 [exp]	5.74	0.8649	FIM1.1
AT4G31410			Protein of unknown function (D...		Potri.018G006400 [exp]	5.83	0.8336
					Potri.009G001301 [exp]	8.36	0.8576
AT5G15080			Protein kinase superfamily pro...		Potri.010G033800 [exp]	9.16	0.8633
AT4G29820		CFIM-25, ATCFIM...	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.006G146400 [exp]	10.48	0.8473
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Potri.018G127900 [exp]	14.07	0.8591
AT3G43230			RING/FYVE/PHD-type zinc finger...		Potri.018G064200 [exp]	15.49	0.8246

Compare expression of checked genes

Potri.001G038100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.