Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79670 613 / 0 WAKL22, RFO1 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) AT1G16260 601 / 0 Wall-associated kinase family protein (.1.2) AT1G16130 600 / 0 WAKL2 wall associated kinase-like 2 (.1) AT1G16150 590 / 0 WAKL4 wall associated kinase-like 4 (.1) AT1G79680 575 / 0 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) AT1G19390 572 / 0 Wall-associated kinase family protein (.1) AT1G69730 572 / 0 Wall-associated kinase family protein (.1) AT4G31100 555 / 0 wall-associated kinase, putative (.1) AT1G17910 545 / 0 Wall-associated kinase family protein (.1) AT1G16120 544 / 0 WAKL1 wall associated kinase-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G039900 [exp] 1248 / 0 AT1G16130 597 / 0.0 wall associated kinase-like 2 (.1) Potri.001G039200 [exp] 1181 / 0 AT1G16260 642 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G040628 [exp] 1176 / 0 AT1G16260 612 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G038525 [exp] 1173 / 0 AT1G16260 642 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G038300 [exp] 1171 / 0 AT1G16260 621 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G040500 [exp] 1165 / 0 AT1G16260 635 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G040000 [exp] 720 / 0 AT1G79670 604 / 0.0 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) Potri.003G185700 [exp] 709 / 0 AT1G16260 622 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G185688 [exp] 709 / 0 AT1G16260 615 / 0.0 Wall-associated kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034085 [exp] 545 / 0 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10003063 [exp] 532 / 0 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10008105 [exp] 395 / 2e-127 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10004504 [exp] 385 / 7e-124 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10038077 [exp] 308 / 1e-93 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1) Lus10013143 [exp] 293 / 1e-93 AT1G16160 270 / 2e-85 wall associated kinase-like 5 (.1) Lus10013384 [exp] 280 / 4e-83 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1) Lus10013385 [exp] 277 / 2e-82 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10013383 [exp] 267 / 2e-78 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1) Lus10014387 [exp] 260 / 3e-77 AT5G02070 493 / 8e-168 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08488 [poplar] [flax] WAK Wall-associated kinase CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.001G039450.1 pacid=42793475 polypeptide=Potri.001G039450.1.p locus=Potri.001G039450 ID=Potri.001G039450.1.v4.1 annot-version=v4.1 ATGATTCCTCGTAGTGTCTCTCTAAATTTTTTCTTGCTATTTCTAGTCCGTGAAATAGCAACTGTATCAGCACTAATTATGGCGAAGCCTAATTGTATAG ACACTTGTGGAAACATTAGCATCCCTTTTCCATTTGGAATAGGAACAGGTTGTTACATGAATGACTGGTTCTCAGTTGATTGCAACAAAACAACTGCGGA TTCTCCCAGCAGGGCTTTCTTAAGCAGAATCAACATGGAGTTCTTGGGGATTTCATTAGAGGACCGTGTGGTTCGAGTAAACAGTCCAATAATTTCCTCC GGCTGTGCTGGTAGAGGTGCCAACTTAGCCATTAATATGACTAGAAGTCCTTTCGCCTTCTCTTCCTCAAACAGGTTCGCCGCAATGGGCTGCAACAATC ATGCTTTATTGACCCAAATTCAGCCCGAAATTGTTGGGTGCACGACGTCAACTTGCAGTGCTAATAATTTGACTAGTTTTAGTACTGAAGGTAAAGAAAA TTGTTACTGTTCTGGTAACAATTGCTGCCAGACCTCAATTCCCTCGAATCTCCAGGTGTTCAACGCGAGTTTGGGGCCCACAGAGGACCCTAATGATCAA GGAAGAAATCAATGCAAGTTAGCTTTTATAGTAGACGGAGAATGGTCCCTGGACAACATAAAAAGTCCCAAGGCGGTGCAATATATGCAGCATGTCCCAG TAATCCTGGATTGGTTTGTGTATGGTGATGACATCCCTGTGGAGAACTCTGATGCAAAGTATTGCAGCCCCCCTGTAAAATTAGTTTCTGGCAGGTGGGG TTTGAGGACAGTAACATTGTATTCCAATTCGATTACTTGTAGGTGCAACCTGGGCTATGATGGCAATCCGTATCTTCCTGATGGATGCACTGATATCGAT GAGTGCAAAATTCCCAAGGGAAATTGGTGTTCGGGGATGACAAAATGTGTGAATGTACCGGGATGGCACAAGTGCGAGCTCGACAAAGCTAAGATCACTT TCTTGATTCTAGGTGCAGCCACTGGATTGTTGTTGCTGCTTGTTGGTATTTGGCGGTTATATAAACTTGAAAAAAAAAGGAAGAACATTGAACTGAAGAA GAAGTTCTTCAAACAAAATGGTGGTTTATTGCTGCAGCAACAATTATCCTCAAGTGATGGAAGCATTCAGAAAACAAAAATATTTACTTCCAAGGAGCTG GAAAAGGCAACCGATCGTTTTAATGATAATAGAATACTTGGTCAAGGTGGCCAAGGAACTGTTTATAAAGGAATGCTAGCAGATGGAAGCATCGTTGCTG TTAAAAAATCCAAAATGATGGATGAAGAAAAGTGGGAAGAATTTATCAATGAGGTCGTCATCCTTTCACAACTCAATCATAGAAATGTGGTGAAGTTGCT AGGTTGTTGTTTAGAGACGGAGGTTCCTCTGCTAGTCTATGAATTCATTCCCAATGGAAATCTCTTTGAGTATATTCATGACCAGAAGGAGGAGTTCGAG TTTTCATGGGAAATGCGACTAAGGATTGCTACTGAAGTTGCTAGGGCACTTTCTTACCTTCATTCCGCAGCATCCATTCCGATTTATCACCGTGATATTA AGTCTACAAATATACTGTTAGATGAGAAGTTCAAAGCAAAAGTATCAGATTTCGGAACTTCAAGATCGATCACCATTGATCAAACTCATCTAACCACTCA TGTTCAAGGCACTTTTGGATACTTGGACCCAGAGTACTTCCAGTCTAGCCAATTTACCGGAAAAAGTGACGTCTACAGTTTTGGTGTTGTTCTTGCAGAG CTCTTGAGTGGGCAAAAACCAATTTCTTATGAAAGGCCGGAAGAGAGGAGAGGTTTAGCCACTCATTTTATTCTTTTGATGGAAGAGAACAAGATATTTG ATATTCTTGATGAACGACTTATGGGGCAGGACCGTGAAGAAGAAGTTATCGCAGTCGCTAATCTTGCAAGAAGATGCTTGAACTTGAATGGAAGGAAACG GCCAACAATGAGAGAAGTCGCGATAGAATTGGAGCAGATTCGGCTGTCAAAAGGAGCTCTTCATGCACAACAAAGTAGTAAAGAACTTGAAAACATCTGG GAGGAAGTTCCCAACGTATGGGAAATTGCTGGGCCTACTACTTCAGTAACAATTGGCGATTTTAGAAATGGCACGGCTCCATCTTTGGATGTCCAAACAT TGATTTCTCACGAAACATGGTGA
AA sequence Show only first row Show all	>Potri.001G039450.1 pacid=42793475 polypeptide=Potri.001G039450.1.p locus=Potri.001G039450 ID=Potri.001G039450.1.v4.1 annot-version=v4.1 MIPRSVSLNFFLLFLVREIATVSALIMAKPNCIDTCGNISIPFPFGIGTGCYMNDWFSVDCNKTTADSPSRAFLSRINMEFLGISLEDRVVRVNSPIISS GCAGRGANLAINMTRSPFAFSSSNRFAAMGCNNHALLTQIQPEIVGCTTSTCSANNLTSFSTEGKENCYCSGNNCCQTSIPSNLQVFNASLGPTEDPNDQ GRNQCKLAFIVDGEWSLDNIKSPKAVQYMQHVPVILDWFVYGDDIPVENSDAKYCSPPVKLVSGRWGLRTVTLYSNSITCRCNLGYDGNPYLPDGCTDID ECKIPKGNWCSGMTKCVNVPGWHKCELDKAKITFLILGAATGLLLLLVGIWRLYKLEKKRKNIELKKKFFKQNGGLLLQQQLSSSDGSIQKTKIFTSKEL EKATDRFNDNRILGQGGQGTVYKGMLADGSIVAVKKSKMMDEEKWEEFINEVVILSQLNHRNVVKLLGCCLETEVPLLVYEFIPNGNLFEYIHDQKEEFE FSWEMRLRIATEVARALSYLHSAASIPIYHRDIKSTNILLDEKFKAKVSDFGTSRSITIDQTHLTTHVQGTFGYLDPEYFQSSQFTGKSDVYSFGVVLAE LLSGQKPISYERPEERRGLATHFILLMEENKIFDILDERLMGQDREEEVIAVANLARRCLNLNGRKRPTMREVAIELEQIRLSKGALHAQQSSKELENIW EEVPNVWEIAGPTTSVTIGDFRNGTAPSLDVQTLISHETW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79670		WAKL22, RFO1	RESISTANCE TO FUSARIUM OXYSPOR...		Potri.001G039450 [exp]	0	1
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Potri.001G039900 [exp]	1.41	0.9658
AT1G16260			Wall-associated kinase family ...		Potri.001G040628 [exp]	22.47	0.9480
AT1G69730			Wall-associated kinase family ...		Potri.001G040756 [exp]	25.39	0.9545
AT1G55090			carbon-nitrogen hydrolase fami...		Potri.003G143700 [exp]	29.79	0.9259
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.008G174900 [exp]	31.93	0.9293
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G016700 [exp]	35.00	0.8979
AT5G04500			glycosyltransferase family pro...		Potri.010G232700 [exp]	35.24	0.9396
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Potri.006G071600 [exp]	37.09	0.9235
AT2G33590			NAD(P)-binding Rossmann-fold s...		Potri.002G004500 [exp]	38.34	0.9151
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G192400 [exp]	39.11	0.9346

Compare expression of checked genes

Potri.001G039450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.