Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16170 94 / 7e-27 unknown protein AT1G79660 92 / 8e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G038750 [exp] 158 / 4e-52 AT1G16170 78 / 2e-20 unknown protein Potri.001G038200 [exp] 156 / 2e-51 AT1G16170 59 / 1e-12 unknown protein Potri.003G186400 [exp] 148 / 4e-48 AT1G16170 92 / 5e-26 unknown protein Potri.001G039700 [exp] 115 / 5e-35 AT1G16170 76 / 9e-20 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024088 [exp] 97 / 1e-27 AT1G79660 119 / 6e-37 unknown protein Lus10041631 [exp] 97 / 1e-27 AT1G79660 119 / 9e-37 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G040300.2 pacid=42791202 polypeptide=Potri.001G040300.2.p locus=Potri.001G040300 ID=Potri.001G040300.2.v4.1 annot-version=v4.1 ATGGTTCTTGATAGCATGATAACTTCTCCTCACCGGAGATCACCATCTTTCCGGAAGCAATTCCCACGGGATGAGTTGGGTAGCTGGTCAACACTCCTTC AGCGACACCGTTTCCTCTTAACAGCCTTGGCTCTCTTGGCTTTCTTATGCACAATCTATCTCTACTTCGCTGTTACCCTAGGGGCCATTGAATCATGTTC TGGACTGACAGGTACCAAAAAGACATTATGTCGTTTGGAGCTGGCAGAGGATTCTGGAGGCAATGGAAAACTCAAATTTTTCTAG
AA sequence Show only first row Show all	>Potri.001G040300.2 pacid=42791202 polypeptide=Potri.001G040300.2.p locus=Potri.001G040300 ID=Potri.001G040300.2.v4.1 annot-version=v4.1 MVLDSMITSPHRRSPSFRKQFPRDELGSWSTLLQRHRFLLTALALLAFLCTIYLYFAVTLGAIESCSGLTGTKKTLCRLELAEDSGGNGKLKFF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16170			unknown protein		Potri.001G040300 [exp]	0	1
AT1G16170			unknown protein		Potri.001G038750 [exp]	1.00	0.9670
AT1G36050			Endoplasmic reticulum vesicle ...		Potri.002G094400 [exp]	2.00	0.9568
AT3G13845			unknown protein		Potri.001G196150 [exp]	4.89	0.9355
AT5G26830			Threonyl-tRNA synthetase (.1)		Potri.010G096500 [exp]	5.19	0.9345	Pt-THRRS.2
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Potri.008G063100 [exp]	5.91	0.9042	SYP81.1
AT5G53860		EMB64, EMB2737	EMBRYO DEFECTIVE 64, embryo de...		Potri.001G398900 [exp]	6.32	0.9325
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Potri.008G219700 [exp]	7.34	0.9386
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Potri.011G166100 [exp]	9.89	0.9244
AT2G34560			P-loop containing nucleoside t...		Potri.004G065100 [exp]	11.61	0.9236
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Potri.003G109800 [exp]	11.91	0.8872

Compare expression of checked genes

Potri.001G040300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.