Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16260 144 / 7e-39 Wall-associated kinase family protein (.1.2) AT1G16130 139 / 8e-37 WAKL2 wall associated kinase-like 2 (.1) AT1G16150 135 / 1e-35 WAKL4 wall associated kinase-like 4 (.1) AT1G79680 134 / 4e-35 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) AT1G19390 132 / 1e-34 Wall-associated kinase family protein (.1) AT1G16120 129 / 2e-33 WAKL1 wall associated kinase-like 1 (.1) AT4G31100 126 / 2e-32 wall-associated kinase, putative (.1) AT1G16160 125 / 3e-32 WAKL5 wall associated kinase-like 5 (.1) AT1G16090 120 / 5e-32 WAKL7 wall associated kinase-like 7 (.1) AT1G16110 121 / 7e-31 WAKL6 wall associated kinase-like 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G186100 [exp] 356 / 2e-118 AT1G16260 625 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G185622 [exp] 240 / 2e-74 AT1G16260 551 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G185644 [exp] 235 / 1e-72 AT1G16260 536 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G185688 [exp] 233 / 8e-72 AT1G16260 615 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G040000 [exp] 223 / 1e-67 AT1G79670 604 / 0.0 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) Potri.003G186200 [exp] 221 / 2e-67 AT1G79680 510 / 2e-172 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.003G185700 [exp] 219 / 3e-66 AT1G16260 622 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G185750 [exp] 209 / 1e-62 AT1G16260 559 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G185800 [exp] 206 / 2e-61 AT1G16260 530 / 7e-180 Wall-associated kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034085 [exp] 125 / 2e-32 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10003063 [exp] 103 / 1e-24 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10038077 [exp] 96 / 8e-22 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1) Lus10013385 [exp] 91 / 3e-20 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10013383 [exp] 90 / 8e-20 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1) Lus10013384 [exp] 57 / 9e-09 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1) Lus10009751 [exp] 48 / 2e-06 AT1G16260 51 / 9e-12 Wall-associated kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08488 [poplar] [flax] WAK Wall-associated kinase PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.001G040600.2 pacid=42788677 polypeptide=Potri.001G040600.2.p locus=Potri.001G040600 ID=Potri.001G040600.2.v4.1 annot-version=v4.1 ATGGCCTACAAATATTTCTTGTCTCCAATCATTCTCCTACCGTTGCCCACCTTATTTCAGTTAGCAAGAGCAGTTGCACCTATAGCAAAGCCTGGTTGTC AAGATCACTGTGGAAACATCAGCATTCCATACCCTTTTGGAACGACAAAAGATTGCTACCTGGAAGAATCGTTTGAGATTGTTTGTGACGAAGCAGCCAG CCCTCCTAGGGTTTTCATAAGAAAAACCAATATGGACGTTCTGAATATTGGAGATGGTGCTGCCGTTGTCAAAGGTCCAATTATGTCCTCCAATTGTTCC GGTAGGCAATCCGGTCCACCTGTGAACTTGGAGGGAAGTCCTTTCTTTTTCTCCTTCGGTAATCTGTTCATTGCAGTCGGCTGCAACATCCGTGCTCTAT TGACAGAGATTGGGCCCCAAGTCAGTGGATGCGACTCAACATGCGTTCCCTACTATAATCATACAACCATTATTTTTGGGCAAGAAATTAATAGTCTCTG TTCTGGTAAGCGCTGCTGCGTAGCCAGAGCTCCTTATAGGATGCAGGTTTTTAATCCAAGTCTAGAAACTAAAAACGAGAGTCAAGACAGCAGTGGATGC AAGCTTACTTTCCTAGCAGACCAAGAATGGGTTGCGTTCTCCAATATAAACAATCCGCAAGTGTTTCATGATCGGGAATATGTTCCGGTGGTGCTGGCTT GGGTGATGGATTACAAGCTTTGGAAATATGACCCCAAGACCATGAGTTGCAAATATTCCCTTCTTGAGCACTCTTTGACTTTAGCCTACGAATGTTCTTG CGGGAAAGGTTACGAGGGCAACCCTTACCTTGGGTGCGTAGGTAAAGTTACTGTTTAA
AA sequence Show only first row Show all	>Potri.001G040600.2 pacid=42788677 polypeptide=Potri.001G040600.2.p locus=Potri.001G040600 ID=Potri.001G040600.2.v4.1 annot-version=v4.1 MAYKYFLSPIILLPLPTLFQLARAVAPIAKPGCQDHCGNISIPYPFGTTKDCYLEESFEIVCDEAASPPRVFIRKTNMDVLNIGDGAAVVKGPIMSSNCS GRQSGPPVNLEGSPFFFSFGNLFIAVGCNIRALLTEIGPQVSGCDSTCVPYYNHTTIIFGQEINSLCSGKRCCVARAPYRMQVFNPSLETKNESQDSSGC KLTFLADQEWVAFSNINNPQVFHDREYVPVVLAWVMDYKLWKYDPKTMSCKYSLLEHSLTLAYECSCGKGYEGNPYLGCVGKVTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16260			Wall-associated kinase family ...		Potri.001G040600 [exp]	0	1
AT4G05030			Copper transport protein famil...		Potri.006G001800 [exp]	56.92	0.6214
AT3G51020			unknown protein		Potri.002G011500 [exp]	59.57	0.6269
AT5G52790			CBS domain-containing protein ...		Potri.017G147900 [exp]	59.59	0.5938
AT1G55265			Protein of unknown function, D...		Potri.001G008240 [exp]	84.42	0.5637
AT1G49230			RING/U-box superfamily protein...		Potri.001G309700 [exp]	98.69	0.6174
					Potri.006G017750 [exp]	110.11	0.6218
AT1G66920			Protein kinase superfamily pro...		Potri.012G003301 [exp]	117.14	0.5943
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.005G133800 [exp]	124.49	0.6164
AT5G02090			unknown protein		Potri.006G090100 [exp]	132.69	0.5807
AT5G49630		AAP6	amino acid permease 6 (.1)		Potri.006G236100 [exp]	172.53	0.5822

Compare expression of checked genes

Potri.001G040600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.