Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16070 436 / 3e-152 TUB AtTLP8 tubby like protein 8 (.1.2) AT2G18280 83 / 4e-17 TUB AtTLP2 tubby like protein 2 (.1.2) AT2G47900 77 / 2e-15 TUB AtTLP3 tubby like protein 3 (.1.2.3) AT1G47270 75 / 1e-14 TUB AtTLP6 tubby like protein 6 (.1.2) AT1G25280 70 / 3e-13 TUB AtTLP10 tubby like protein 10 (.1.2.3) AT1G76900 69 / 2e-12 TUB AtTLP1 tubby like protein 1 (.1.2) AT5G18680 68 / 3e-12 TUB AtTLP11 tubby like protein 11 (.1) AT3G06380 67 / 7e-12 TUB ATTLP9 tubby-like protein 9 (.1) AT1G43640 65 / 3e-11 TUB AtTLP5 tubby like protein 5 (.1) AT1G53320 64 / 5e-11 TUB AtTLP7 tubby like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G185401 [exp] 134 / 4e-38 AT1G16070 57 / 1e-10 tubby like protein 8 (.1.2) Potri.005G192300 [exp] 81 / 2e-16 AT1G76900 609 / 0.0 tubby like protein 1 (.1.2) Potri.002G068200 [exp] 81 / 2e-16 AT1G76900 603 / 0.0 tubby like protein 1 (.1.2) Potri.011G109300 [exp] 81 / 2e-16 AT1G53320 504 / 5e-180 tubby like protein 7 (.1) Potri.005G192400 [exp] 78 / 2e-15 AT1G76900 607 / 0.0 tubby like protein 1 (.1.2) Potri.005G121600 [exp] 77 / 3e-15 AT2G18280 504 / 4e-179 tubby like protein 2 (.1.2) Potri.008G195200 [exp] 76 / 6e-15 AT2G47900 544 / 0.0 tubby like protein 3 (.1.2.3) Potri.002G034600 [exp] 74 / 4e-14 AT1G47270 490 / 4e-173 tubby like protein 6 (.1.2) Potri.001G390200 [exp] 73 / 5e-14 AT1G53320 516 / 0.0 tubby like protein 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024102 [exp] 546 / 0 AT1G16070 422 / 3e-146 tubby like protein 8 (.1.2) Lus10041617 [exp] 530 / 0 AT1G16070 416 / 2e-144 tubby like protein 8 (.1.2) Lus10033208 [exp] 79 / 1e-15 AT1G47270 476 / 1e-167 tubby like protein 6 (.1.2) Lus10010645 [exp] 77 / 3e-15 AT1G47270 471 / 6e-166 tubby like protein 6 (.1.2) Lus10018884 [exp] 73 / 8e-14 AT1G76900 596 / 0.0 tubby like protein 1 (.1.2) Lus10010833 [exp] 73 / 9e-14 AT1G47270 469 / 3e-165 tubby like protein 6 (.1.2) Lus10033977 [exp] 72 / 2e-13 AT2G47900 548 / 0.0 tubby like protein 3 (.1.2.3) Lus10028579 [exp] 72 / 2e-13 AT1G25280 597 / 0.0 tubby like protein 10 (.1.2.3) Lus10033209 [exp] 72 / 2e-13 AT1G47270 471 / 1e-165 tubby like protein 6 (.1.2) Lus10012803 [exp] 72 / 2e-13 AT2G47900 523 / 0.0 tubby like protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [poplar] [flax] Tubby_C PF01167 [poplar] [flax] Tub Tub family
Representative CDS sequence Show only first row Show all	>Potri.001G041400.1 pacid=42788738 polypeptide=Potri.001G041400.1.p locus=Potri.001G041400 ID=Potri.001G041400.1.v4.1 annot-version=v4.1 ATGGCTGGTTTCAGAAAACCCACATTGCCAAACCAATCTTCATACAACTCCGTTTATGTTAATCCCCTCACTGACTCCAAACACCATCATACTTGCAGTG AAGGTGATCTCCTTACAAAATCGTTCACTGACAACAAAGAGAACATTGATAACACTGCCAAGTTTGGCGGTGTTGACAAAGAAAATGCAGTGCCCAACAA CTCAAAACCTTTGTCTACAAATGGGTCTCTCTCTGTTTTGCCAAAGCCACAGTTATCCAATATGAAGTCTTTGTCCACTGGAAGAGTCCTAAAGCCTTCT TCTCTACAGTTGTGTATGCAAATGAATGAGCCTGAAAAGGTTTTTAAGTCTAAAATTTGGGACTCTGCTGAGTCTGAGAAGTCAAATTCTGTCAATATTT GGGACTATTCAGATTCTGAGGCTGCTCCAGCTTCTTCTTGGTCTGCATTGCCTAACAGGGCATTGTTGTGCAGGCCATTGCCACTGGACATAGGGAGATG TACTTGTGTTATTATGAAGGAAGCATTGCCAGAAGGGTTAGATGGGGGTACATTGTACTCACTCTACACCAATGAAGGGCATGGTCGACAGGATCGGAAA CTAGCTATAGCTCACCATAAGAGGCGTAATGGAAAGTCAGAGTTCACTATAGCTCAGAATTTGAAGGGAGTTCTTTCTAGTTCAGATGATAGCTTTGTAG GAAACGTAACAGCAAACCTCATGGGTTCCAAGTATCACATATGGGATCAGGGTGGTGCTGTCAACTCCAAAAGGGGCAATCTACTTCTGGCAGTTGTTAC ATTCAAGCCTACCATAGCCACTTGGACTGGAAGTTACAGAATCATGAGGGCATATGTACCAAAACACCAATCCATGCAGCTAAAGAATACAACCCTGATG CAACATATTAATGGTTTGGCTAGGGACTGGGAGGGGAAAATGGACAAAGTACATAAGCTATGCTCAAGGACTCCACGATACAATAATATGTCAAAGCAGT ACGAGTTAGACTTCAGAGATAGAGGAAGAGCTGGGCTTGGAATCCAAAGCTCAGTGAAGAACTTCCAGCTAACATTGGAGGAAAATGGAAAGCAGACAAT TTTACAACTTGGAAGGGTAGGGAAGTCGAAGTTTGTTATGGATTTCAGATATCCTCTAACAGGTTACCAAGCATTTTGCATATGTTTGGCATCCATTGAC TCGAAACTTTGTTGCTCGATGTAA
AA sequence Show only first row Show all	>Potri.001G041400.1 pacid=42788738 polypeptide=Potri.001G041400.1.p locus=Potri.001G041400 ID=Potri.001G041400.1.v4.1 annot-version=v4.1 MAGFRKPTLPNQSSYNSVYVNPLTDSKHHHTCSEGDLLTKSFTDNKENIDNTAKFGGVDKENAVPNNSKPLSTNGSLSVLPKPQLSNMKSLSTGRVLKPS SLQLCMQMNEPEKVFKSKIWDSAESEKSNSVNIWDYSDSEAAPASSWSALPNRALLCRPLPLDIGRCTCVIMKEALPEGLDGGTLYSLYTNEGHGRQDRK LAIAHHKRRNGKSEFTIAQNLKGVLSSSDDSFVGNVTANLMGSKYHIWDQGGAVNSKRGNLLLAVVTFKPTIATWTGSYRIMRAYVPKHQSMQLKNTTLM QHINGLARDWEGKMDKVHKLCSRTPRYNNMSKQYELDFRDRGRAGLGIQSSVKNFQLTLEENGKQTILQLGRVGKSKFVMDFRYPLTGYQAFCICLASID SKLCCSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16070	TUB	AtTLP8	tubby like protein 8 (.1.2)		Potri.001G041400 [exp]	0	1
AT3G27350			unknown protein		Potri.001G336300 [exp]	1.00	0.9736
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Potri.009G089200 [exp]	4.24	0.9511
AT4G17000			unknown protein		Potri.001G287800 [exp]	6.24	0.9472
AT1G72670		IQD8	IQ-domain 8 (.1)		Potri.003G042700 [exp]	8.00	0.9599
AT5G60930			P-loop containing nucleoside t...		Potri.002G106100 [exp]	8.30	0.9544
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Potri.009G058900 [exp]	8.48	0.9538	TOP2.3
AT5G49880			mitotic checkpoint family prot...		Potri.004G228900 [exp]	10.90	0.9433
AT5G11510	MYB	ATMYB3R-4, AtMY...	myb domain protein 3R4, myb do...		Potri.006G241700 [exp]	12.00	0.9472	Pt-MYB3.2,MYB160
AT3G20150			Kinesin motor family protein (...		Potri.001G360200 [exp]	13.22	0.9518
AT4G17240			unknown protein		Potri.006G017200 [exp]	13.78	0.9416

Compare expression of checked genes

Potri.001G041400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.