Plant FIBer expression Database

Potri.001G041550 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G209800
[exp]
41 / 2e-05 AT3G16510 137 / 8e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G041550.1 pacid=42793606 polypeptide=Potri.001G041550.1.p locus=Potri.001G041550 ID=Potri.001G041550.1.v4.1 annot-version=v4.1
ATGTCTGCAACAAAAAGCTTACCCCCTAGCAATCCAGCCCCTCGGCCCATTTCAAATCTATTCTTCTCTGGTGACTTACTGCTGCACTTGCACTGGTGGT
GGGTGGGTGCCCATGAACATGTGGATTTACCATTGCCTGCTAAATCCAAAAGCTCCTTTAGTGGCGCGTTGACTTCATCAACATCTACATCCCCTGAAGC
ACGCTCGCATTTAAGCTTGATTACAAGATTTAGACGGTTCTCTGTAAGTGGGATATGGGGGCAAAAGATGAAAAGAGAAGAAGAAAGAGATACAAAATAA
AA sequence
>Potri.001G041550.1 pacid=42793606 polypeptide=Potri.001G041550.1.p locus=Potri.001G041550 ID=Potri.001G041550.1.v4.1 annot-version=v4.1
MSATKSLPPSNPAPRPISNLFFSGDLLLHLHWWWVGAHEHVDLPLPAKSKSSFSGALTSSTSTSPEARSHLSLITRFRRFSVSGIWGQKMKREEERDTK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G041550
[exp]
0 1
AT5G07280 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCES... Potri.015G141200
[exp]
4.12 0.8253 Pt-EMS1.1
AT1G51405 myosin-related (.1) Potri.001G256700
[exp]
16.58 0.7802
AT2G26710 CYP72B1, CYP734... PHYB ACTIVATION TAGGED SUPPRES... Potri.006G154500
[exp]
18.97 0.7885
AT1G75520 SRS5 SHI-related sequence 5 (.1) Potri.005G234200
[exp]
24.61 0.7828
AT5G06270 unknown protein Potri.006G206000
[exp]
37.88 0.7707
AT1G30080 Glycosyl hydrolase superfamily... Potri.011G084900
[exp]
44.37 0.7594
AT3G63300 FKD1 FORKED 1 (.1.2) Potri.005G213800
[exp]
45.89 0.7507
AT5G06860 ATPGIP1, PGIP1 polygalacturonase inhibiting p... Potri.016G049400
[exp]
48.53 0.7434 PGIP.3
AT2G41540 GPDHC1 6-phosphogluconate dehydrogena... Potri.006G046900
[exp]
59.02 0.7406
AT2G17080 Arabidopsis protein of unknown... Potri.002G012400
[exp]
66.63 0.7188

Potri.001G041550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.