Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79710 586 / 0 Major facilitator superfamily protein (.1) AT5G25050 530 / 0 Major facilitator superfamily protein (.1) AT5G25040 451 / 5e-155 Major facilitator superfamily protein (.1.2.3) AT5G10820 376 / 5e-126 Major facilitator superfamily protein (.1) AT2G32040 164 / 1e-44 Major facilitator superfamily protein (.1) AT5G54860 148 / 5e-39 Major facilitator superfamily protein (.1) AT1G64890 67 / 1e-11 Major facilitator superfamily protein (.1) AT1G04570 66 / 2e-11 Major facilitator superfamily protein (.1) AT2G33280 65 / 4e-11 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G017100 [exp] 623 / 0 AT5G25050 580 / 0.0 Major facilitator superfamily protein (.1) Potri.006G266000 [exp] 594 / 0 AT5G25050 579 / 0.0 Major facilitator superfamily protein (.1) Potri.006G265500 [exp] 444 / 1e-152 AT5G10820 620 / 0.0 Major facilitator superfamily protein (.1) Potri.018G017400 [exp] 447 / 3e-152 AT5G10820 612 / 0.0 Major facilitator superfamily protein (.1) Potri.010G085900 [exp] 173 / 7e-48 AT2G32040 650 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137300 [exp] 150 / 6e-40 AT5G54860 633 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137400 [exp] 143 / 3e-37 AT5G54860 609 / 0.0 Major facilitator superfamily protein (.1) Potri.019G043000 [exp] 91 / 1e-19 AT1G64890 488 / 3e-171 Major facilitator superfamily protein (.1) Potri.013G076300 [exp] 81 / 3e-16 AT1G64890 493 / 3e-173 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041620 [exp] 673 / 0 AT1G79710 644 / 0.0 Major facilitator superfamily protein (.1) Lus10024099 [exp] 671 / 0 AT1G79710 630 / 0.0 Major facilitator superfamily protein (.1) Lus10003419 [exp] 572 / 0 AT5G25050 625 / 0.0 Major facilitator superfamily protein (.1) Lus10026893 [exp] 570 / 0 AT5G25050 628 / 0.0 Major facilitator superfamily protein (.1) Lus10026890 [exp] 390 / 1e-130 AT5G10820 558 / 0.0 Major facilitator superfamily protein (.1) Lus10006106 [exp] 189 / 3e-53 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10010565 [exp] 183 / 4e-51 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10037809 [exp] 127 / 2e-31 AT5G54860 630 / 0.0 Major facilitator superfamily protein (.1) Lus10024977 [exp] 65 / 5e-11 AT1G64890 508 / 2e-179 Major facilitator superfamily protein (.1) Lus10023708 [exp] 64 / 1e-10 AT1G04570 451 / 3e-154 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.001G041600.1 pacid=42791333 polypeptide=Potri.001G041600.1.p locus=Potri.001G041600 ID=Potri.001G041600.1.v4.1 annot-version=v4.1 ATGGAAGAATCCCAGTTAGAAAGGAACCCAAGAAATGGTTTCTTGGCTTTGGTGTTGAGACCAATAAATTGGCTAAAAATGCTTGGTGAAGAGTTGCATT GGAGTTTTGTGCTAGGAGTTATGATTGTTTATGGGATCAGTCAGGGATTTGCAGTTGGCATGAGTAAAGTTAGTACTAAGTACTATATGAAAGATGAGCA GAAGGTACAGCCATCCGAATTACAGGTGTATTTGGGGTTGCTTCAACTTCCTTGGGTAATTAAGCCTTTATGGGGTCTCCTCACCGATACACTTCCTGTT CTTGGGTACAGAAGGCGGCCTTATTTCATTTTTGCAGGTTTTCTTAGCGTGACCTCGATGCTTGCTCTATCAATCCAAAGAAACTTGAGTCTTGCATTTT CCCTATTGTCTCTAATGGGGGTAAGTGCTGGGATAGCAATAGCGGATGTAGCCATTGATGCCTGTGTGACACAAAACAGCATAAGTCATCCTTCTTTAGC TGGTGATATGCAAAGCTTGTGTGGATTCAGCTCTTCCATTGGAGCACTGGTGGGCTATTCACTCAGTGGCTTTTTGGTTCACCTAGTTGGCCCAAAGGGA GTGTTTGGGCTTCTCAGTGTGCCAGCAGGCCTGGTTATCTTGGTTGGAATGATGCTGAAAGAATCCCGTGTTCATAAATTTACGCACAGAGGAGTAAATG AGAAGTTTCTGGATGCTGGTAAGGCCATGTGGACAGCACTGAAATTCCGTGATGTATGGAGGCCATGTCTATACATGTACTTGTCACTTGCTGTGAGCTT GAATATTCATGAAGGGATGTTCTATTGGTATACAGATGCGAAGGGAGGTCCATCTTTTTCACAGGAGGTTGTTGGGTCCATATTCTCGGTGGGTGCAGTT GGCTCCCTCTCTGGGGTCCTTATCTACCAAAATTGGTTGAAAGACCATCGTTTTCGCGACTTGCTTTTCTGGTCTCAGTTGTTGTATGGTGCATCAGGGT TGCTAGATTTGATATTGGTGTTGCGTCTGAACTTGAAAATTGGTTTACCTGATTATTTCTTTGTTGTGATTGATGAAGCCATTTCTATGATGATTGGACG CATTAAATGGCAGCCTCTTCTTGTACTTAGTTCCAAGCTTTGCCCTGCTGGTATAGAGGGCACTTTCTTTGCTTTGCTCATGTCAATAGACCATGTTGGT TTGCTTTCATCAACTTGGGTAGGAGGTCTCTTACTCAAATTCTTGAAGGTTACACGGACACAATTTGACAATCTTTGGGTGGCCATTTTAATCCGGAGCC TCATGAGAATAATTCCAGTTTTTCTGCTGTTTCTGATACCTAGAAGCGATCCAAACTTATCCATTCTTCCAGAAGAGATGTTGAAGACCAAAAAAGGTGA CAATAGACTTGAATCTGAAAACACCGAGATGGTCTCCCTCGCTGATAGCACTTGA
AA sequence Show only first row Show all	>Potri.001G041600.1 pacid=42791333 polypeptide=Potri.001G041600.1.p locus=Potri.001G041600 ID=Potri.001G041600.1.v4.1 annot-version=v4.1 MEESQLERNPRNGFLALVLRPINWLKMLGEELHWSFVLGVMIVYGISQGFAVGMSKVSTKYYMKDEQKVQPSELQVYLGLLQLPWVIKPLWGLLTDTLPV LGYRRRPYFIFAGFLSVTSMLALSIQRNLSLAFSLLSLMGVSAGIAIADVAIDACVTQNSISHPSLAGDMQSLCGFSSSIGALVGYSLSGFLVHLVGPKG VFGLLSVPAGLVILVGMMLKESRVHKFTHRGVNEKFLDAGKAMWTALKFRDVWRPCLYMYLSLAVSLNIHEGMFYWYTDAKGGPSFSQEVVGSIFSVGAV GSLSGVLIYQNWLKDHRFRDLLFWSQLLYGASGLLDLILVLRLNLKIGLPDYFFVVIDEAISMMIGRIKWQPLLVLSSKLCPAGIEGTFFALLMSIDHVG LLSSTWVGGLLLKFLKVTRTQFDNLWVAILIRSLMRIIPVFLLFLIPRSDPNLSILPEEMLKTKKGDNRLESENTEMVSLADST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79710			Major facilitator superfamily ...		Potri.001G041600 [exp]	0	1
AT2G29990		NDA2	alternative NAD(P)H dehydrogen...		Potri.009G047100 [exp]	3.16	0.9124
AT1G75170			Sec14p-like phosphatidylinosit...		Potri.002G261000 [exp]	4.24	0.8667
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Potri.002G259900 [exp]	6.00	0.8535
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.001G265400 [exp]	12.00	0.8406
AT5G14740		BETACA2, CA18, ...	CARBONIC ANHYDRASE 18, BETA CA...		Potri.010G041100 [exp]	15.00	0.8551
AT3G59310			Eukaryotic protein of unknown ...		Potri.003G030800 [exp]	15.29	0.8383
AT2G28120			Major facilitator superfamily ...		Potri.009G006400 [exp]	17.66	0.8581
AT4G13310		CYP71A20	"cytochrome P450, family 71, s...		Potri.003G192300 [exp]	24.67	0.8313
AT3G11560			LETM1-like protein (.1.2.3.4)		Potri.006G208300 [exp]	24.97	0.8554
AT5G03570		FPN2, ATIREG2	FERROPORTIN 2, ARABIDOPSIS THA...		Potri.016G128600 [exp]	25.82	0.8246

Compare expression of checked genes

Potri.001G041600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.