Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24100 363 / 5e-121 ASG1 ALTERED SEED GERMINATION 1, unknown protein AT4G30780 352 / 7e-115 unknown protein AT3G05770 119 / 4e-29 unknown protein AT1G54300 114 / 3e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G185050 [exp] 865 / 0 AT2G24100 392 / 2e-132 ALTERED SEED GERMINATION 1, unknown protein Potri.018G102800 [exp] 518 / 4e-180 AT4G30780 501 / 1e-172 unknown protein Potri.006G180500 [exp] 499 / 4e-173 AT4G30780 503 / 2e-173 unknown protein Potri.013G009000 [exp] 208 / 1e-60 AT2G24100 202 / 6e-59 ALTERED SEED GERMINATION 1, unknown protein Potri.005G014600 [exp] 168 / 7e-46 AT2G24100 167 / 5e-46 ALTERED SEED GERMINATION 1, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036602 [exp] 488 / 4e-168 AT4G30780 511 / 5e-176 unknown protein Lus10035819 [exp] 487 / 1e-167 AT4G30780 514 / 3e-177 unknown protein Lus10041622 [exp] 444 / 3e-152 AT2G24100 351 / 1e-116 ALTERED SEED GERMINATION 1, unknown protein Lus10024097 [exp] 429 / 2e-146 AT2G24100 335 / 2e-110 ALTERED SEED GERMINATION 1, unknown protein Lus10010920 [exp] 168 / 7e-47 AT2G24100 184 / 8e-54 ALTERED SEED GERMINATION 1, unknown protein Lus10029847 [exp] 145 / 1e-36 AT2G24100 160 / 6e-42 ALTERED SEED GERMINATION 1, unknown protein Lus10020694 [exp] 138 / 3e-35 AT2G24100 145 / 5e-38 ALTERED SEED GERMINATION 1, unknown protein Lus10029846 [exp] 135 / 3e-34 AT2G24100 137 / 2e-35 ALTERED SEED GERMINATION 1, unknown protein Lus10007704 [exp] 65 / 9e-13 AT4G30780 74 / 1e-16 unknown protein Lus10024256 [exp] 63 / 3e-11 AT2G24100 59 / 3e-10 ALTERED SEED GERMINATION 1, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G041800.17 pacid=42790047 polypeptide=Potri.001G041800.17.p locus=Potri.001G041800 ID=Potri.001G041800.17.v4.1 annot-version=v4.1 ATGGTTCAGTCAATGAGTTCCTTAAGCAGAAAAGCATCAGTGAAGCTGGAAGCTGATGATTCCTTGGAGGATCAACTCAGTCCACTTCACAAACGTTCAA AACTTGATCCTTGTTTACAGGTGATAATCCCAGATGCAGTACTGTATAATCCACTTCAAGAGCCAAGTCCAATTGGCTTGACACTGAAAAAGAGTCCATC TTTTTTGGATTTGATTCAAATGAAGTTATCTCAGCAAAACACTAGTAATACTATGTTGTCAAAGAAACCTAGTAGTGCTGCTGCTGATAAGCTTAAAGCT TCAAACTTTACTGCTTCACTTCTAAAAATAGGGAGTTGGGAGTGTAAGTCAAGATACGAAGGGGATTTGGTGGCAAAGTGTTATTTTGCTAAGCATAAAC TTGTTTGGGAAGTGCTTGATGGTGGTCTTAAGAATAAGATTGAAATTCAGTGGTCAGATATTGTGGCTATCAAGGCAAATTTTCCTGATGATGGACCAGA AACCTTGGATGTAGTGGGTTGTATGTGTTTGGCGCAGCTGGCTAGACAACCCCTTTTCTTTAGAGAGACAAATCCACAGCCTAGGAAGCATACTTTGTGG CAGGCAACATCAGATTTTACTGGTGGACAAGCTAGCACACACAGGCGGCATTTTCTCCAGTTCCAGCAAGGCTTCATGGGCAAGCATTATGAAAAACTTA TTCAATGTGATCCTCGTCTCAGCTTTCTTAGTCAACAACTAGAAATTATATTAGAATCTCCATATTTTGCGCAAAGAGTTTCTGCATTCAGTGACTTGCA TGAATCTGGCAAGGGGCTTGATTCAGAAGTTGAGGATAGAACAGCTGTTTTTGCTCTGCAGGAAGCAGGGCCACCATCTGGAGTTCTTTCATCTTCCTTG AATAATGAATGCCAAGGTTTAACGTGTCAGTCTCCTGAAAATATTTCCCAGCAAACTTCTTCAACTACCTTAGTAATGGAAACCCATGCATTTGAAGAAA CCAGGAGCAACAGAACAGGAGAACAGCAGTTGCCAAGCAATTGTGATCAAATTAAAGTGCCCGGACTTCATCCATCCATTTCAATGAGCGACCTTGTGAA CCACATTGGACATTGCATTTCAGAACAGATGACCTCTGGAAATTCTATCCTCTCTGGTGGTGACATAAAGAGCAGTGACATTCTAGATGAAATTACTCAA TACTTGCTTGGAGACTCTCAAGTTATGTCAGCCTCGGATGAGCAATCCGTTGTGTCAACGGTCAATTCTCTTTGCTGCCTACTGCAGAAGGATCCTGCAA CAGCTCGGGACTTGCAGGCAAAGAGTCTCAGCGATCTTGATGTGGATCATGATAGGAGAATAAACGAAACTAATTCCACTGCATCTGCGTGTCAAAGCAA ATTTATAGAGAGTTTTCCCGCACCTGAGGGAGAGGCCAGTAATGTTTCCATTTGCAAGCAGGCACCAGCCATGTCAAGGAAGGACTCGGTTGGAGAGCTA CTTCTTAATCTTCCAAGTATTGCTTCTCTGCCACAATTTTTATTCAATATATAG
AA sequence Show only first row Show all	>Potri.001G041800.17 pacid=42790047 polypeptide=Potri.001G041800.17.p locus=Potri.001G041800 ID=Potri.001G041800.17.v4.1 annot-version=v4.1 MVQSMSSLSRKASVKLEADDSLEDQLSPLHKRSKLDPCLQVIIPDAVLYNPLQEPSPIGLTLKKSPSFLDLIQMKLSQQNTSNTMLSKKPSSAAADKLKA SNFTASLLKIGSWECKSRYEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDIVAIKANFPDDGPETLDVVGCMCLAQLARQPLFFRETNPQPRKHTLW QATSDFTGGQASTHRRHFLQFQQGFMGKHYEKLIQCDPRLSFLSQQLEIILESPYFAQRVSAFSDLHESGKGLDSEVEDRTAVFALQEAGPPSGVLSSSL NNECQGLTCQSPENISQQTSSTTLVMETHAFEETRSNRTGEQQLPSNCDQIKVPGLHPSISMSDLVNHIGHCISEQMTSGNSILSGGDIKSSDILDEITQ YLLGDSQVMSASDEQSVVSTVNSLCCLLQKDPATARDLQAKSLSDLDVDHDRRINETNSTASACQSKFIESFPAPEGEASNVSICKQAPAMSRKDSVGEL LLNLPSIASLPQFLFNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.001G041800 [exp]	0	1
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.014G103000 [exp]	1.41	0.9254	Pt-ATHB.5
AT2G40095			Alpha/beta hydrolase related p...		Potri.010G189600 [exp]	2.00	0.9240
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Potri.010G163000 [exp]	3.87	0.8927	Pt-WRKY3.2
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.004G017666 [exp]	4.47	0.8857
AT2G44130			Galactose oxidase/kelch repeat...		Potri.003G218400 [exp]	4.89	0.8586
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.011G041600 [exp]	7.00	0.8696
AT2G23150		ATNRAMP3, NRAMP...	natural resistance-associated ...		Potri.007G050600 [exp]	9.27	0.7995	Pt-NRAMP3.1
AT2G35390			Phosphoribosyltransferase fami...		Potri.003G088400 [exp]	9.48	0.8504
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.009G109400 [exp]	9.79	0.8882
AT5G42900		COR27	cold regulated gene 27 (.1.2.3...		Potri.002G125900 [exp]	10.72	0.8452

Compare expression of checked genes

Potri.001G041800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.