Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57820 47 / 9e-06 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G180600 [exp] 57 / 3e-08 AT5G18260 52 / 4e-07 RING/U-box superfamily protein (.1) Potri.002G031600 [exp] 43 / 0.001 AT1G75400 329 / 7e-109 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002316 [exp] 152 / 3e-38 AT1G14180 48 / 1e-05 RING/U-box superfamily protein (.1.2) Lus10035820 [exp] 54 / 3e-07 AT5G18260 47 / 3e-06 RING/U-box superfamily protein (.1) Lus10037162 [exp] 44 / 0.0006 AT1G69523 268 / 4e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036764 [exp] 43 / 0.0006 AT1G14180 134 / 2e-37 RING/U-box superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G042000.1 pacid=42790619 polypeptide=Potri.001G042000.1.p locus=Potri.001G042000 ID=Potri.001G042000.1.v4.1 annot-version=v4.1 ATGGCAAGTGAAAAGCCAAAACAAGGAGATAAATTAGCAAATCCTAGTTCTACACCGCAAAGGAATGAAAAACTCGGGGCTCTTGATCTAACTAATTCAC CTGCTGGCCATAATGAGATTCTTGATGATCGGTTGCCACCATTTCCTTTTTTCCAAACTGGGGATATGCAGGGAATGCCTCAACATTATGCTCAGGAAAT GCCATTGCCTGCCATCCGTATGATGAATGATTTTTCCCATTTCAATTTCTCTGACCGTACTGCATTTGACCATGATTACTTATATAGGCCAGTTCCAGAT ATTTCACTCTTGGAAGGGAATGTGAACGAACCAGTTGATTGTTTTCCCTCATGTGCTTTAACAGATGTTGCTAGTAAGATTTATGATGGTCTTCAGAACT CCAAGATACACAGAAAAGTTGACAGTGCCAGGAGCGACGTGGCTAGAGGCTCAGAAATGCACAGGGAGGCTGCAGAAGCAAAAAATAGTGATGTGCACAG GTCTTCCCTAATTGGAGAAAGGGGAGCTAGCACACCTATGGCAACGCATAACTCAACTAGTGGAAGAGGGGTAATTAATAACATTGTCAACACAAGTGCA GCTCAGTCTAGTCATCCTCAAATCCTTGATGGGAGTTCTTTGAAGCTGGGAGTTGGATCTAATGCAGAGCCCAGGTATACTTCTAATGTCTCCAGCAGAT ATGGCACTCTTAAGTATAATGAGGCTGCTCTTCCCCAATCAAGTGCTTTATGTGGTCAAAAAGATGATACAAGTTCTTTGAGCTCTTCTTCAAAGATGAC TGGGAATTTTTCTACTATTCAAAACAATGCTGGAGGATTCGATAATAATGCTTCGAATGACAGTGGATTTTCCAGCCTCACACAGAATGTTGATGGGCTT TCTAGGGTAGTACGAAATGCAGGTAGGGCTTCTCAACAAGTGCAGAATGTTGTTGAATTTTCTAACCTGCTGCCGAATATTGGTGGGTTTTCCAATCAAA TGCAGAGTGTGGATGGGATTTCTCCTCAAACGCCAAATGTGGATGGATTTTCTAGTCAACTGCAGAGTGTAGAGCAGCTTCCTAGACTATCTCAGAATGA GGGTGGTAGGACTTTGTCACTTTTAGCAGATAGGCAACATTATCATTCTATTTCAAGCAACTGGAGCTCAGGACCCAAAGTGAATGCGAATGCAAGATTT TCAAATGTAAATCCTAGTACAGGTTTTCGGGGTTTTCCCACTGAGCCCTTAATACTACATAATAGAAATCAAGTTGGCATGCCTGATTATGGACACGGGG AAACCGGGTTGCAATCATATTATTTCATTAGGAATGCTACTCAAAGTTCTTCTGACCAAAGACAGTATCCTCACACAGGAACTTTCATGAACCTCTCACC TGACCCTTCTCTGGTTGTTCCTTTTGTAGGGTTCGCCAGAAGCAACCGTGGACAGAGTCAATCAGGTCAAGTAATCCCAGCAGCAAATGCACCTGCTCAG GCGTCCAGTGTTCCTTGTAGACCATCATGTAAGAGGGGTGCAAGTGAATCTTCTCTTGCTACTCCCGAGGCTTTACACCGAAAGTTCAGAGTTTCTAGAG CTTCCAGTCACTTGTCTACTCCAAATATGGCCCAAATTGCTTCACCTCATGCACCACCGCCTCTGGCTTGGACTCCTTCCTTGAGGCCGCCCTCTGTCCA ACTAGCTCGCCCATGCATAATCCAATCTCCTCCAGATGTGTCACAAATTAATGCACCAGCTCTGGTTCAGATTCCTCACTTGAGACCACCACCGGTTCAA GCAGCTTACCGAAACCTAGCTCAGTGTGCTTCGAATGTGGCCCAAATGACTCCACCTCACTCACCTTTGGCTTGGACTCCTCCCAACTTAGCCCTAGTCC AAACTGATCATCCACACCTAGCGCAGTTTGCTCTGAATTTGACCCGAGCTTCACCCAATGCACCTCTGGCTGGGACTCCTCTCTCAAGCCAATTGCTAAT CCAAACTGTTCGCCCAAACTTGGCCCTGAAGCCTCCAATTCGCCAACTCTTGGCCCAAAAAACATCTGGTCGACCACCCCTTTCCCATCATGTTCCACCC TTGCCCAGTATAAAAGCACCTGATCACATAAAATGGCAAGATCCAGAAAAAACTCCTCAACTAAGTGGACACCAGTGTTTTATATGCAAGAGGGATCTCT CATTCACGCCAGAAGGGCCAGTGGAACAACCAGTGAATCCACAACCTGTTGCTGTCTTGCCATGCCACCACCACTTTCATGCTTTCTGCTTGGAGCGTAT TACTACCGGAAGCGATGCAGAGAATCCTCCATGTATTCCTTGTGCCATGGGTGACAAGAACTAG
AA sequence Show only first row Show all	>Potri.001G042000.1 pacid=42790619 polypeptide=Potri.001G042000.1.p locus=Potri.001G042000 ID=Potri.001G042000.1.v4.1 annot-version=v4.1 MASEKPKQGDKLANPSSTPQRNEKLGALDLTNSPAGHNEILDDRLPPFPFFQTGDMQGMPQHYAQEMPLPAIRMMNDFSHFNFSDRTAFDHDYLYRPVPD ISLLEGNVNEPVDCFPSCALTDVASKIYDGLQNSKIHRKVDSARSDVARGSEMHREAAEAKNSDVHRSSLIGERGASTPMATHNSTSGRGVINNIVNTSA AQSSHPQILDGSSLKLGVGSNAEPRYTSNVSSRYGTLKYNEAALPQSSALCGQKDDTSSLSSSSKMTGNFSTIQNNAGGFDNNASNDSGFSSLTQNVDGL SRVVRNAGRASQQVQNVVEFSNLLPNIGGFSNQMQSVDGISPQTPNVDGFSSQLQSVEQLPRLSQNEGGRTLSLLADRQHYHSISSNWSSGPKVNANARF SNVNPSTGFRGFPTEPLILHNRNQVGMPDYGHGETGLQSYYFIRNATQSSSDQRQYPHTGTFMNLSPDPSLVVPFVGFARSNRGQSQSGQVIPAANAPAQ ASSVPCRPSCKRGASESSLATPEALHRKFRVSRASSHLSTPNMAQIASPHAPPPLAWTPSLRPPSVQLARPCIIQSPPDVSQINAPALVQIPHLRPPPVQ AAYRNLAQCASNVAQMTPPHSPLAWTPPNLALVQTDHPHLAQFALNLTRASPNAPLAGTPLSSQLLIQTVRPNLALKPPIRQLLAQKTSGRPPLSHHVPP LPSIKAPDHIKWQDPEKTPQLSGHQCFICKRDLSFTPEGPVEQPVNPQPVAVLPCHHHFHAFCLERITTGSDAENPPCIPCAMGDKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57820			zinc ion binding (.1)		Potri.001G042000 [exp]	0	1
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.008G215700 [exp]	1.00	0.8531
AT4G11270			Transducin/WD40 repeat-like su...		Potri.001G098700 [exp]	3.74	0.7678
AT1G11420		ATDUF2	DOMAIN OF UNKNOWN FUNCTION 724...		Potri.014G117800 [exp]	4.89	0.7871
AT1G76410		ATL8	RING/U-box superfamily protein...		Potri.005G255200 [exp]	6.48	0.7919
AT4G13030			P-loop containing nucleoside t...		Potri.002G247400 [exp]	6.78	0.8109
AT5G52950			unknown protein		Potri.012G033800 [exp]	9.38	0.7566
AT3G16810		APUM24	pumilio 24 (.1)		Potri.008G211400 [exp]	10.72	0.7852
AT1G04570			Major facilitator superfamily ...		Potri.008G173600 [exp]	11.48	0.7837
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Potri.005G051100 [exp]	11.95	0.7696
AT4G37130			hydroxyproline-rich glycoprote...		Potri.007G036600 [exp]	12.24	0.7725

Compare expression of checked genes

Potri.001G042000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.