Plant FIBer expression Database

Potri.001G042100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G042200
[exp]
65 / 1e-13 ND /
Potri.003G184501
[exp]
61 / 4e-12 ND /
Potri.003G184601
[exp]
52 / 2e-08 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G042100.1 pacid=42787696 polypeptide=Potri.001G042100.1.p locus=Potri.001G042100 ID=Potri.001G042100.1.v4.1 annot-version=v4.1
ATGATGACTACTCCAATGACAAATGTTCTCTTCCTTGCTTTAGCTTTAGCTTTTATTGGACTTTCAGCCATTGATTCCGCTCAAGCAAGAACTTTACCAG
ACAGGTTTGGCCTCAAAGTTGCAAAAACATTAGCTACCCCGCCACCTCCGTGTATGGTACAATCAACAAGAGATTATCAGAAATACTTGACTTCGCCACC
ACCAACGACTAGTTATGATCAAGAGACCTTGAGCTCACCTCCAAGGCCTGACTCGACAAAAGGCCAACTTGATATTGAGTCTCCATGCAGTAATGAAGAG
AGTCCATGCATTAATGATGGTTGCATATCTATGATAACAGATTTTGAGAGGCCTATACCAAGTTCAAACCCACCTCCAAAACAACATACTCCTACGGTGC
CATTACTGCGTCCAAAATCACCTCCAAGGCAATACCTCGTGTCAGCTAGAAATCATCATCCATGA
AA sequence
>Potri.001G042100.1 pacid=42787696 polypeptide=Potri.001G042100.1.p locus=Potri.001G042100 ID=Potri.001G042100.1.v4.1 annot-version=v4.1
MMTTPMTNVLFLALALAFIGLSAIDSAQARTLPDRFGLKVAKTLATPPPPCMVQSTRDYQKYLTSPPPTTSYDQETLSSPPRPDSTKGQLDIESPCSNEE
SPCINDGCISMITDFERPIPSSNPPPKQHTPTVPLLRPKSPPRQYLVSARNHHP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G042100
[exp]
0 1
AT1G30690 Sec14p-like phosphatidylinosit... Potri.001G461400
[exp]
10.90 0.7991
AT3G03000 EF hand calcium-binding protei... Potri.003G095700
[exp]
21.33 0.7761
AT1G80980 unknown protein Potri.001G047700
[exp]
43.68 0.7725
AT2G36080 B3 ABS2, NGAL1 AP2/B3-like transcriptional fa... Potri.006G208100
[exp]
52.24 0.7519
AT3G12720 MYB ATMYB67, AtY53 myb domain protein 67 (.1) Potri.001G075400
[exp]
84.33 0.7139
AT4G12730 FLA2 FASCICLIN-like arabinogalactan... Potri.014G168100
[exp]
108.79 0.7124
AT5G20230 SAG14, ATBCB SENESCENCE ASSOCIATED GENE 14,... Potri.010G243600
[exp]
151.98 0.6985
AT4G08810 SUB1 calcium ion binding (.1) Potri.003G219200
[exp]
186.24 0.7115
AT5G22930 Protein of unknown function (D... Potri.009G006000
[exp]
251.65 0.6964
AT1G71530 Protein kinase superfamily pro... Potri.013G100100
[exp]
262.16 0.6944

Potri.001G042100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.