Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50310 237 / 4e-75 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT5G67080 231 / 4e-73 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT4G36950 231 / 6e-73 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT3G45670 196 / 4e-59 Protein kinase superfamily protein (.1) AT3G46140 189 / 2e-56 Protein kinase superfamily protein (.1) AT3G45790 187 / 2e-55 Protein kinase superfamily protein (.1) AT4G26890 179 / 6e-52 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT5G55090 179 / 1e-51 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT2G32510 172 / 8e-50 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1) AT2G42550 168 / 2e-48 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G184200 [exp] 684 / 0 AT4G36950 246 / 8e-79 mitogen-activated protein kinase kinase kinase 21 (.1) Potri.007G044800 [exp] 249 / 6e-80 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139200 [exp] 239 / 7e-76 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.006G181000 [exp] 232 / 3e-73 AT3G45670 213 / 4e-66 Protein kinase superfamily protein (.1) Potri.005G139300 [exp] 231 / 7e-73 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.009G131100 [exp] 188 / 6e-57 AT3G50310 200 / 4e-62 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.004G007700 [exp] 174 / 1e-49 AT5G55090 321 / 2e-105 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.011G007400 [exp] 166 / 2e-46 AT5G55090 326 / 3e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.014G155000 [exp] 159 / 3e-45 AT1G05100 317 / 3e-107 mitogen-activated protein kinase kinase kinase 18 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012668 [exp] 231 / 7e-73 AT3G50310 347 / 5e-119 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034288 [exp] 194 / 3e-59 AT3G50310 181 / 5e-55 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034285 [exp] 194 / 4e-59 AT5G27510 183 / 6e-56 Protein kinase superfamily protein (.1) Lus10034242 [exp] 194 / 4e-59 AT3G50310 190 / 2e-58 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10019340 [exp] 191 / 2e-57 AT5G67080 306 / 6e-103 mitogen-activated protein kinase kinase kinase 19 (.1) Lus10039141 [exp] 186 / 8e-56 AT3G46140 168 / 1e-49 Protein kinase superfamily protein (.1) Lus10026894 [exp] 183 / 5e-55 AT3G50310 187 / 1e-57 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10030042 [exp] 153 / 4e-42 AT2G32510 324 / 2e-108 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10035284 [exp] 150 / 3e-41 AT2G32510 319 / 9e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10031544 [exp] 145 / 2e-38 AT1G05100 298 / 3e-97 mitogen-activated protein kinase kinase kinase 18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.001G042400.2 pacid=42789611 polypeptide=Potri.001G042350.1.p locus=Potri.001G042400 ID=Potri.001G042400.2.v4.1 annot-version=v4.1 ATGAAGGGAAAGGCAAAACACGTAGTAGGAGGAGGGGGAGAAGAGAGCATGAAGTACAGCAATAACAATGGCGGAGTGGCATGGTCAAGAGGGCCACTTC TTGGCAAAGGAGGGTTTGGATCAGTTTATTTAGCAAGTTTAAAGAGCCCCAAATCAAGAAATGGCTATTATCCTCCAGTTATGGCTGTCAAGTCTGCAGA GGTCTCTGCTTCTTGTTCACTTCAAAAGGAGAAAGAGGTATTTAACTGTCTCAATGGCTGTCCTTTTATTATCAAGTGTTTTGGTGAAGAAACTACTAGG GATGGAGGTGGTGAGATGTTTTATAATGTGTTGTTAGAGTATGCATCAGGAGGGACCTTAGCTGGTCTTATCAAGAAATCTGATGGTGTTGGTTTGCCTG AATTGGATGTGAAAAGATACACTAGGTCTATTCTTGAAGGGATCCATTATATTCATAGCCATGGTTATGTGCATTGTGATCTCAAGCCTGAGAATATTTT GCTTGTTTCCAGTAGTACGAAGGCAGGTGAATTTGTGGCAAAGATTGGGGATTTTGGGTTGGCAAAGAAATCAGAGAAGAGGAACAAGAAAAGGAAAATC GACCCTTATTTAAGAGGGACTACTTTGTACATGGCACCAGAGACTGTGGCTAATCATGTTCAAGAGCCTCCTTGTGACATATGGGCTCTTGGATGTGTTG TGCTTGAGATGCTTACTGGCAAGCAAGCTTGGGATGTGAAACCTGATGTTACTATTGAAGAACTAAAGAGAAAGATTGGTGATGGATATGAATTGCCTAA AATGCCTTCAGAGGTTTCGAAGGATGCCAAGGATTTCTTGAAAAGGTGTTTTGTTGCCAACCCTATGTTCAGGTTTACTGCTGAGATGTTGCTGGATGAA CCTTTTGTGTCAGGAGTGGATTTAGATGGTGGTGAATTTGTGGAGACTTTGGATGCAGAAAGTGTGGAATGGACAGACACATTATGCGGGACAGATGATG AATTTAGTGGCTCCTCATTTTATGAAGAGTGGAGCTTCACATCAGATGAGGGTTCATGTTTCTCTCCTTGGTCTGATGATGAAGAGGGTATTACCAGTAA TGTTGATGCAATGACGCATGCATCACGGGTTGAAGAAAATGCAGTGCAGCAGTATCTGCCAACCTGCACTATCCCTGCTGGTGCATAG
AA sequence Show only first row Show all	>Potri.001G042400.2 pacid=42789611 polypeptide=Potri.001G042350.1.p locus=Potri.001G042400 ID=Potri.001G042400.2.v4.1 annot-version=v4.1 MKGKAKHVVGGGGEESMKYSNNNGGVAWSRGPLLGKGGFGSVYLASLKSPKSRNGYYPPVMAVKSAEVSASCSLQKEKEVFNCLNGCPFIIKCFGEETTR DGGGEMFYNVLLEYASGGTLAGLIKKSDGVGLPELDVKRYTRSILEGIHYIHSHGYVHCDLKPENILLVSSSTKAGEFVAKIGDFGLAKKSEKRNKKRKI DPYLRGTTLYMAPETVANHVQEPPCDIWALGCVVLEMLTGKQAWDVKPDVTIEELKRKIGDGYELPKMPSEVSKDAKDFLKRCFVANPMFRFTAEMLLDE PFVSGVDLDGGEFVETLDAESVEWTDTLCGTDDEFSGSSFYEEWSFTSDEGSCFSPWSDDEEGITSNVDAMTHASRVEENAVQQYLPTCTIPAGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Potri.001G042400 [exp]	0	1
AT3G05200		ATL6	RING/U-box superfamily protein...		Potri.005G036800 [exp]	8.36	0.8767
AT3G46620			zinc finger (C3HC4-type RING f...		Potri.009G034800 [exp]	9.89	0.8385
AT2G15760			Protein of unknown function (D...		Potri.009G105400 [exp]	12.12	0.7794
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Potri.004G200400 [exp]	12.60	0.8558
AT5G43470		HRT, RCY1, RPP8	RECOGNITION OF PERONOSPORA PAR...		Potri.003G149800 [exp]	16.43	0.8418
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G138800 [exp]	17.23	0.8333	DREB47
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Potri.008G219200 [exp]	19.10	0.8434	ATL2.3
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G079800 [exp]	20.59	0.8446	ERF6
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Potri.007G138100 [exp]	20.71	0.8188
AT1G74360			Leucine-rich repeat protein ki...		Potri.012G067600 [exp]	22.80	0.8115

Compare expression of checked genes

Potri.001G042400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.