Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24130 703 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G47570 454 / 3e-143 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 450 / 1e-141 EFR EF-TU receptor (.1) AT3G47090 436 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 429 / 3e-134 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 427 / 4e-133 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 392 / 1e-118 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 372 / 6e-113 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G65710 366 / 1e-110 HSL2 HAESA-like 2 (.1) AT2G01950 367 / 1e-109 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G184100 [exp] 1483 / 0 AT2G24130 710 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.006G181200 [exp] 744 / 0 AT2G24130 1186 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.018G103400 [exp] 733 / 0 AT2G24130 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G020900 [exp] 511 / 8e-165 AT3G47570 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G060100 [exp] 508 / 1e-163 AT3G47570 670 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044500 [exp] 506 / 4e-163 AT3G47570 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G031300 [exp] 495 / 7e-159 AT3G47570 574 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G030800 [exp] 491 / 3e-157 AT3G47570 576 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 486 / 2e-155 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010772 [exp] 560 / 0 AT2G24130 928 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10030638 [exp] 471 / 1e-149 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 457 / 1e-144 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033330 [exp] 457 / 4e-144 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 456 / 5e-144 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 456 / 5e-144 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 456 / 1e-143 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033363 [exp] 454 / 4e-143 AT3G47570 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 451 / 4e-142 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 459 / 2e-141 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G042500.1 pacid=42793611 polypeptide=Potri.001G042500.1.p locus=Potri.001G042500 ID=Potri.001G042500.1.v4.1 annot-version=v4.1 ATGATCTTCATCAGAACATTTCTGCTGCTGCTGTTCCAGCATTTATTTCTAAGTTCTGCTTTCGCGGTTTCAGGTTCTCGCCACCATCGTAACCATTCCT TGCTTGCTGACGAGGCTGCTCTTCTAGCATTCAAAAAGACCATCGTTTTTGATCCAGAGTCCAAGCTAGCTGGCTGGACTGAGGGCGGAGATGTTTGCAG CTTCACAGGTGTCCGATGTGACAAACATCGTCACAGTGTGGTACAACTCAATCTGTCCCGCAGTGGACTCACCGGGGCATTGTCACCCATCATTTCAAAT CTCAGTGGGCTTCGATATCTCATTCTTGATGAGAATCACTTTTATGGCATTATTCCTCCCGAATTTTCTTCTCTCCGGCATCTGCATTCTCTTCGGCTAG ACAGCAATAATCTACGTGGCTCATTTCCGGGATTTCTTGCTGCTCTTCCCAACCTCACCGTGCTAACTCTCACTGAAAACCATTTGATGGGCACACTTCC ACCTTCTTTATTCTCTAACTGCACTTCATTAGCAAATATAGAACTGTCACAGAACTTGCTTACGGGAAAAATTCCCCAGGAGATTGGAAATTGTCCAAGT CTCTGGAACCTCAATTTGTACAACAATCAATTTACAGGAGAACTTCCTGCATCTTTAGCCAACATTTCAGAACTGTATAATATAGATGTGGAGTCTAACA GTCTTACTGGAGAATTGCCCGCAAATATCATAGGGAAACTATATTCAGTTGTCTCGCTCCACTTCTCATATAATAAGATGGTCAGCCATGATCACAACAC CAACCTCGAGCCATTCTTTACAGCACTTGCAAATTGTACCGAATTGCAGGAGCTGGAATTGGCTGGTATGCGCCTTGGAGGAAGATTGCCCAGTTCAATT GGCCGACTTAGCGGCGACCTAAGCACTCTGTTATTGCAAGAAAACAGCATCTTTGGAACGATTCCTCCAGGCATAGCACGTCTTTCCAGCCTTACGTGGC TGAACTTGACGTCCAATTCTCTAAATGGGACCATTTCAGCCGAAATCAGCCGGTTGTCTTACTTGGAGCAGCTTTTCTTATCACATAACTTGCTAACGGG TGCAATTCCAGCAGCATTAGGTCAACTCCCTCATCTTGGTCTGCTCGACCTGTCAAACAATCAACTCTCTGGTGAAATCCCTGCAAGTCTAGGAAATTTG GTTCGATTGAGTTTTATGTTTCTCAACAACAACCTTCTTACAGGAACTATTCCTCCAACATTAGGGAAGTGCACTGATCTTTCCATGCTGGACCTGTCCT ATAACAGATTGACAGGGAGTATTCCTCCAGAAATATCAGGTATACGCGAGATCCGAAGATATCTAAATCTTTCACACAATCTTCTTGATGGTCCTTTACC TATAGAACTCAGTAAGCTGGAAAATGTTGAAGAGATAGATGTTTCATCAAACAACCTCAGCGGGAGCATCTTCTTTCAGATATCAAGCTGCATCGCAGTG ACGCGGCTAAATTTCTCACACAATTCTATTGAAGGGCACCTTCCTGATTCCATTGGTGATCTAAAGAACCTTGAATCCTTTGATGTTTCAGGAAACCACT TATCTGGAGGTATCCCAACAAGCCTCAACAAAAGTCGAAGCCTCAGTTTCCTAAATCTTTCTTTCAACGACTTTGCAGGAGTGATACCCTCTGGTGGTGT CTTCAATTCTGTCACGGATAAGTCATTCATAGGCAATCAGGATCTTTGTGGTGCAGTTTCTGGCATGCCCAAATGCTCTCATAAGAGACATTGGTTTCGC TTACGTTTGTTCTTGATTGTATTTGTACTGCTCACATTTGCATCAGCTTTCTTAACAACAATTTTCTGTGTGATTGGAATCCGCCGTATCAAGGCCATGG TTTCCTCTGGAAACTCTGTGGATACAGAACAGGCAAGGAAACCAGAAACTCCAGAACTGATCCACAATTTTCCAAGAGTTACATATAGAGAACTCTCTGA AGCCACGGGAGGGTTTGATGAGCAGAGACTAGTTGGGACAGGTAGCTATGGACGTGTCTATAAGGGTCTTCTTCCAGATGGGACAGCCATAGCCGTAAAG GTATTGCAGTTCCAGTCTGGGAATTCAACCAAGAGTTTTAACAGAGAATGCCAAGTGTTGAAGAGGATTAGGCACAGAAATCTGATAAGGATCATAACAG CATGCAGTCTTCCTGATTTCAAGGCTCTTGTTCTTCCATACATGGCAAATGGAAGCTTGGATAGCCGTCTATATCCCCATTCAGAGACAGGTTTAGGTTC AGGCAGTTCCGATTTGACTCTCCTACAGAGGGTTAGCATTTGCAGTGACATAGCTGAAGGCATGGCCTATCTGCATCACCACTCCCCTGTTAAAGTCATA CATTGTGATCTAAAGCCAAGTAACGTTCTTCTTAACGATGACATGACAGCTCTGGTTTCTGATTTTGGCATAGCAAGGCTGGTTATGACTGTTGGGGGTG GAAATGGTGGGGTGGTTGAGAATATGGGAAACTCTACAGCAAATTTGCTTTGCGGATCAATCGGATACATCGCTCCAGAGTATGGATTCGGATCAAACAC TTCTACAAAAGGAGATGTTTACAGCTTTGGCGTTCTAGTACTCGAGATGGTGACTAGAAAAAGGCCAACAGATGACATGTTTGTCGGTGGGCTAAACCTA CACAAATGGGTCAAGACTCACTACCATGGTAGATTAGAGAGAGTGGTAGACCCTTCCTTGATGAGAGCTTCAAGAGATCAATTCCATGAAGTGAAAAGGA TGTGGGAAGTTGCCATTGGAGAATTAGTTGAGCTGGGTATTCTTTGCACTCAGGAGTCCCCCTCTACTAGGCCTACAATGCTTGATGCTGCTGATGACTT GGATAGACTAAAGAGGTATCTTAGTGGCGACACAACTGCCACATTTGCTTCCTCTCTAGGGATTTCATCATCCACTCTCGGAGATGACTAA
AA sequence Show only first row Show all	>Potri.001G042500.1 pacid=42793611 polypeptide=Potri.001G042500.1.p locus=Potri.001G042500 ID=Potri.001G042500.1.v4.1 annot-version=v4.1 MIFIRTFLLLLFQHLFLSSAFAVSGSRHHRNHSLLADEAALLAFKKTIVFDPESKLAGWTEGGDVCSFTGVRCDKHRHSVVQLNLSRSGLTGALSPIISN LSGLRYLILDENHFYGIIPPEFSSLRHLHSLRLDSNNLRGSFPGFLAALPNLTVLTLTENHLMGTLPPSLFSNCTSLANIELSQNLLTGKIPQEIGNCPS LWNLNLYNNQFTGELPASLANISELYNIDVESNSLTGELPANIIGKLYSVVSLHFSYNKMVSHDHNTNLEPFFTALANCTELQELELAGMRLGGRLPSSI GRLSGDLSTLLLQENSIFGTIPPGIARLSSLTWLNLTSNSLNGTISAEISRLSYLEQLFLSHNLLTGAIPAALGQLPHLGLLDLSNNQLSGEIPASLGNL VRLSFMFLNNNLLTGTIPPTLGKCTDLSMLDLSYNRLTGSIPPEISGIREIRRYLNLSHNLLDGPLPIELSKLENVEEIDVSSNNLSGSIFFQISSCIAV TRLNFSHNSIEGHLPDSIGDLKNLESFDVSGNHLSGGIPTSLNKSRSLSFLNLSFNDFAGVIPSGGVFNSVTDKSFIGNQDLCGAVSGMPKCSHKRHWFR LRLFLIVFVLLTFASAFLTTIFCVIGIRRIKAMVSSGNSVDTEQARKPETPELIHNFPRVTYRELSEATGGFDEQRLVGTGSYGRVYKGLLPDGTAIAVK VLQFQSGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLDSRLYPHSETGLGSGSSDLTLLQRVSICSDIAEGMAYLHHHSPVKVI HCDLKPSNVLLNDDMTALVSDFGIARLVMTVGGGNGGVVENMGNSTANLLCGSIGYIAPEYGFGSNTSTKGDVYSFGVLVLEMVTRKRPTDDMFVGGLNL HKWVKTHYHGRLERVVDPSLMRASRDQFHEVKRMWEVAIGELVELGILCTQESPSTRPTMLDAADDLDRLKRYLSGDTTATFASSLGISSSTLGDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24130			Leucine-rich receptor-like pro...		Potri.001G042500 [exp]	0	1
AT2G47430		CKI1	CYTOKININ-INDEPENDENT 1, Signa...		Potri.013G009700 [exp]	13.52	0.8929
					Potri.004G095550 [exp]	16.97	0.8906
AT4G18490			unknown protein		Potri.011G063500 [exp]	19.89	0.8896
AT5G15250		FTSH6, ATFTSH6	FTSH protease 6 (.1.2)		Potri.017G084000 [exp]	25.65	0.8859
AT4G21700			Protein of unknown function (D...		Potri.011G052500 [exp]	26.45	0.8064
AT5G49010		EMB2812, SLD5	SYNTHETIC LETHALITY WITH DPB11...		Potri.010G147050 [exp]	34.58	0.8718
AT5G27870			Plant invertase/pectin methyle...		Potri.010G010464 [exp]	34.64	0.8732
AT5G59720		HSP18.2 HSP18.1...	heat shock protein 18.2 (.1)		Potri.010G195700 [exp]	37.52	0.8818	Pt-HSP18.4
AT4G17020			transcription factor-related (...		Potri.004G041600 [exp]	40.47	0.8587
AT2G29500			HSP20-like chaperones superfam...		Potri.009G148000 [exp]	45.16	0.8619

Compare expression of checked genes

Potri.001G042500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.