Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48930 749 / 0 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT5G57840 372 / 7e-126 HXXXD-type acyl-transferase family protein (.1) AT2G19070 312 / 1e-102 SHT spermidine hydroxycinnamoyl transferase (.1) AT5G41040 276 / 1e-88 HXXXD-type acyl-transferase family protein (.1.2) AT3G48720 275 / 2e-88 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G63560 266 / 7e-85 HXXXD-type acyl-transferase family protein (.1) AT1G03390 206 / 1e-61 HXXXD-type acyl-transferase family protein (.1) AT1G65450 201 / 2e-59 HXXXD-type acyl-transferase family protein (.1.2.3) AT1G27620 179 / 2e-51 HXXXD-type acyl-transferase family protein (.1) AT2G40230 178 / 3e-51 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G183900 [exp] 840 / 0 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 579 / 0 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028000 [exp] 520 / 0 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028100 [exp] 519 / 0 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G104700 [exp] 510 / 3e-180 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.006G165200 [exp] 353 / 2e-118 AT2G19070 595 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.018G109900 [exp] 331 / 6e-110 AT2G19070 563 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.015G100800 [exp] 275 / 2e-88 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.001G326300 [exp] 275 / 3e-88 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002321 [exp] 660 / 0 AT5G48930 639 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10026097 [exp] 612 / 0 AT5G48930 599 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10026123 [exp] 598 / 0 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10010786 [exp] 473 / 6e-166 AT5G48930 451 / 5e-157 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10022163 [exp] 469 / 5e-164 AT5G48930 449 / 2e-156 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10037266 [exp] 357 / 6e-120 AT5G48930 365 / 4e-123 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10001282 [exp] 349 / 3e-116 AT2G19070 501 / 3e-175 spermidine hydroxycinnamoyl transferase (.1) Lus10021394 [exp] 315 / 2e-103 AT2G19070 466 / 4e-162 spermidine hydroxycinnamoyl transferase (.1) Lus10005358 [exp] 306 / 6e-100 AT2G19070 471 / 2e-164 spermidine hydroxycinnamoyl transferase (.1) Lus10012552 [exp] 291 / 2e-94 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.001G042900.3 pacid=42788476 polypeptide=Potri.001G042900.3.p locus=Potri.001G042900 ID=Potri.001G042900.3.v4.1 annot-version=v4.1 ATGATAATCAACGTGAAGGAGTCAACCATGGTGCAGCCGGCGGAGGAGACGCCCCGGAGGGGGCTGTGGAATTCTAATGTGGACTTGGTGGTACCAAGGT TCCACACCCCAAGTGTCTATTTTTATAGGCCCACAGGTGCTCCAAACTTCTTTGATGCAAAAGTGCTCAAAGGGGCTTTGAGTAAGGCCCTTGTGCCATT CTACCCCATGGCAGGACGGTTACGTAGAGATGAGGATGGTCGCATTGAAATTAATTGCAATGCTGAGGGAGTGTTGTTTGTTGAGGCTGAGACCACCTCA GTTATAGATGATTTTGCTGATTTTGCACCCACTTTGGAGCTCAAGCAGCTCATACCTACTGTGGATTACTCTGGCGGGATATCTACCTATCCTCTTTTGG TTCTGCAGGTGACTTATTTCAAATGCGGAGGAGTTTCACTTGGTGTTGGTATGCAACACCATGCAGCGGATGGGTTTTCTGGTCTTCACTTCGTGAACAC ATGGTCAGATATGGCTCGTGGACTTGACCTTACCATTCCACCCTTCATTGACAGGACCCTTCTCCGTGCCAGAGATCCACCTCAACCTGTATTCCACCAC GTTGAGTACCAGCCTCCACCGTCCATGAAAACCGTTCTTGAAACCTCAAAACCAGAGAGCACGGCGGTCTCCATTTTTAAGTTGTCTAGGGATCAGCTCA GCACCCTCAAAGCCAAAGCAAAGGAAGATGGAAACAATATTAGTTATAGTTCATATGAGATGTTGGCGGCTCATGTGTGGAGATCAACATGCAAAGCACG TGAACTTCCTGATGATCAAGAGACCAAGTTATATATTGCCACAGATGGTCGGTCAAGATGGCAACCTCAACTCCCTCCTGGTTACTTTGGCAATGTGATC TTTACAGCAACACCAATTGCTGTAGCTGGTGAAATGCAATCAAAGCCAACATGGTATGCTGCAGGAAAAATTCATGATGCATTGGTTCGCATGGATAACG ATTATTTAAAGTCAGCCCTTGATTATCTAGAGCTTCAGCCTGACTTGTCAGCCCTTGTTCGTGGTGCCCATAGTTTCCGGTGCCCAAATCTTGGGATTAC TAGCTGGGTTAGACTGCCAATCCACGATGCAGATTTTGGCTGGGGCAGACCCATATTCATGGGGCCTGGTGGGATCGCATACGAGGGCTTATCATTCATC CTACCCAGCCCAACAAATGATGGGAGCATGTCAGTAGCCATATCTTTGCAAGCTCAACATATGAAACTATTTGAGAAGTTCATATATGACATTTAA
AA sequence Show only first row Show all	>Potri.001G042900.3 pacid=42788476 polypeptide=Potri.001G042900.3.p locus=Potri.001G042900 ID=Potri.001G042900.3.v4.1 annot-version=v4.1 MIINVKESTMVQPAEETPRRGLWNSNVDLVVPRFHTPSVYFYRPTGAPNFFDAKVLKGALSKALVPFYPMAGRLRRDEDGRIEINCNAEGVLFVEAETTS VIDDFADFAPTLELKQLIPTVDYSGGISTYPLLVLQVTYFKCGGVSLGVGMQHHAADGFSGLHFVNTWSDMARGLDLTIPPFIDRTLLRARDPPQPVFHH VEYQPPPSMKTVLETSKPESTAVSIFKLSRDQLSTLKAKAKEDGNNISYSSYEMLAAHVWRSTCKARELPDDQETKLYIATDGRSRWQPQLPPGYFGNVI FTATPIAVAGEMQSKPTWYAAGKIHDALVRMDNDYLKSALDYLELQPDLSALVRGAHSFRCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFI LPSPTNDGSMSVAISLQAQHMKLFEKFIYDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.001G042900 [exp]	0	1
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Potri.010G249600 [exp]	3.60	0.8930
AT3G28050			nodulin MtN21 /EamA-like trans...		Potri.003G192900 [exp]	4.00	0.8880
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.010G187600 [exp]	5.65	0.8896
AT3G52790			peptidoglycan-binding LysM dom...		Potri.010G231000 [exp]	10.90	0.8747
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.001G320500 [exp]	11.61	0.8880	SAHH.1
AT4G34500			Protein kinase superfamily pro...		Potri.004G154000 [exp]	13.74	0.8725
AT4G24130			Protein of unknown function, D...		Potri.003G146400 [exp]	14.07	0.8267
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Potri.012G139100 [exp]	18.97	0.8224
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Potri.006G033300 [exp]	19.74	0.8857	C3H1,CYP98.1
AT1G75280			NmrA-like negative transcripti...		Potri.002G034400 [exp]	21.77	0.8839

Compare expression of checked genes

Potri.001G042900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.