Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	J8.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80920 129 / 2e-38 AtToc12, AtJ8, J8 translocon at the outer envelope membrane of chloroplasts 12, Chaperone DnaJ-domain superfamily protein (.1) AT5G59610 54 / 4e-09 Chaperone DnaJ-domain superfamily protein (.1.2) AT2G41000 52 / 1e-08 Chaperone DnaJ-domain superfamily protein (.1.2) AT2G33735 49 / 7e-08 Chaperone DnaJ-domain superfamily protein (.1) AT3G08970 50 / 1e-07 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT5G16650 48 / 1e-07 Chaperone DnaJ-domain superfamily protein (.1) AT1G72070 48 / 2e-07 Chaperone DnaJ-domain superfamily protein (.1) AT1G28210 48 / 9e-07 ATJ1 DNAJ heat shock family protein (.1.2) AT4G39960 47 / 1e-06 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G79940 47 / 2e-06 ATERDJ2A DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G183700 [exp] 236 / 1e-80 AT1G80920 130 / 4e-39 translocon at the outer envelope membrane of chloroplasts 12, Chaperone DnaJ-domain superfamily protein (.1) Potri.001G072700 [exp] 56 / 8e-10 AT5G59610 254 / 3e-84 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.016G120000 [exp] 57 / 1e-09 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.007G094900 [exp] 50 / 1e-07 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.002G090600 [exp] 49 / 2e-07 AT1G77930 376 / 1e-132 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.019G041400 [exp] 47 / 2e-07 AT5G16650 193 / 5e-65 Chaperone DnaJ-domain superfamily protein (.1) Potri.013G058100 [exp] 48 / 7e-07 AT5G18140 264 / 1e-86 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G073900 [exp] 47 / 1e-06 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.014G122600 [exp] 47 / 1e-06 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014352 [exp] 132 / 5e-40 AT1G80920 135 / 2e-41 translocon at the outer envelope membrane of chloroplasts 12, Chaperone DnaJ-domain superfamily protein (.1) Lus10026061 [exp] 124 / 9e-37 AT1G80920 136 / 1e-41 translocon at the outer envelope membrane of chloroplasts 12, Chaperone DnaJ-domain superfamily protein (.1) Lus10041671 [exp] 124 / 2e-36 AT1G80920 138 / 2e-42 translocon at the outer envelope membrane of chloroplasts 12, Chaperone DnaJ-domain superfamily protein (.1) Lus10024067 [exp] 117 / 9e-34 AT1G80920 130 / 4e-39 translocon at the outer envelope membrane of chloroplasts 12, Chaperone DnaJ-domain superfamily protein (.1) Lus10016510 [exp] 63 / 5e-12 AT5G59610 252 / 2e-83 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10040777 [exp] 61 / 3e-11 AT5G59610 246 / 6e-81 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10003380 [exp] 57 / 7e-10 AT3G08970 615 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10002852 [exp] 56 / 2e-09 AT3G08970 600 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012702 [exp] 51 / 7e-08 AT1G77930 368 / 2e-129 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10001296 [exp] 51 / 7e-08 AT1G77930 370 / 2e-130 Chaperone DnaJ-domain superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.001G043100.1 pacid=42789356 polypeptide=Potri.001G043100.1.p locus=Potri.001G043100 ID=Potri.001G043100.1.v4.1 annot-version=v4.1 ATGGCCAGTGCAGCAGCTGTTGGGATGGTGGGAGGAAATGGGTGTGCGGGGTCTTCAGCTTCTTGGTTTCAGATCAAGAATAGGAGAAAGAAGAATAGTA ATGATAAGATGGGGAGAGATGGAGTCAGGTTTTTTACTGCTGCTTCCTATTCTTCTCCTTCTGTCATGGACCCTTACAAGACTCTTAGGATCCAACCTGA TGCTTCTGAATCTGAGGTCAAGAAAGCTTTTAGACAGCTTGCTTTGCAGTATCATCCAGATGTCTGCAGAGGAAGCAATTGTGGTGTGCAGTTTAGCCTG ATCAATGAAGCCTATGATACTGTGATGAGTAATTTGAGGGAAGAACCAGATGAATCATCACAAATGTACATGTCTTATGAGCCGTCGGAACAGGGAATTG ATGAGCCCATGAGAGGAATGAACGACACAGATTGGGATATGTGGGAGGAATGGATGGGATGGGAAGGGGCTGGAATTCGTGACTACTCATCCCATGTTAA TCCTTACATTTAA
AA sequence Show only first row Show all	>Potri.001G043100.1 pacid=42789356 polypeptide=Potri.001G043100.1.p locus=Potri.001G043100 ID=Potri.001G043100.1.v4.1 annot-version=v4.1 MASAAAVGMVGGNGCAGSSASWFQIKNRRKKNSNDKMGRDGVRFFTAASYSSPSVMDPYKTLRIQPDASESEVKKAFRQLALQYHPDVCRGSNCGVQFSL INEAYDTVMSNLREEPDESSQMYMSYEPSEQGIDEPMRGMNDTDWDMWEEWMGWEGAGIRDYSSHVNPYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Potri.001G043100 [exp]	0	1	J8.1
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Potri.001G190700 [exp]	1.00	0.9451
AT3G03080			Zinc-binding dehydrogenase fam...		Potri.017G002500 [exp]	2.00	0.9445
AT1G15670			Galactose oxidase/kelch repeat...		Potri.006G196900 [exp]	2.23	0.9385
AT4G27450			Aluminium induced protein with...		Potri.011G049900 [exp]	7.28	0.9177
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Potri.005G213300 [exp]	9.38	0.9087	MCCA.1
AT1G54070			Dormancy/auxin associated fami...		Potri.001G164800 [exp]	10.19	0.9272
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Potri.015G087700 [exp]	15.36	0.9434
AT4G14270			unknown protein		Potri.008G074600 [exp]	16.70	0.8694
AT4G18250			receptor serine/threonine kina...		Potri.017G008100 [exp]	31.36	0.9319
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Potri.003G052800 [exp]	32.37	0.8732

Compare expression of checked genes

Potri.001G043100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.