Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16000 106 / 6e-32 unknown protein AT1G80890 81 / 1e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G183501 [exp] 101 / 6e-30 AT1G16000 68 / 1e-16 unknown protein Potri.004G051201 [exp] 68 / 1e-16 AT1G16000 52 / 4e-10 unknown protein Potri.008G111650 [exp] 45 / 4e-08 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023116 [exp] 114 / 8e-35 AT1G16000 120 / 2e-37 unknown protein Lus10011478 [exp] 101 / 9e-30 AT1G16000 125 / 3e-39 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G043300.4 pacid=42788222 polypeptide=Potri.001G043300.4.p locus=Potri.001G043300 ID=Potri.001G043300.4.v4.1 annot-version=v4.1 ATGGGAAGCGAGGCAACAAGCAATGGTAGTGCCAACAGTGGAGGATTCAAGTCAAGAGTACAGCGTTACTTGTATAGTGGAGACACAAAGCATGTCATGG CTGGCATGGCCGTCATAACTCTTGTCTTTGGTGTCCCTTGGTTCCTCATGAACAGAGGAACAAAGCACGCGTCTCATCAAGATTACATGGAAAAGGCTGA TAAAGCAAGGCTTGACAGACTTTCTTCAGGTTCTGCTGCTACATGA
AA sequence Show only first row Show all	>Potri.001G043300.4 pacid=42788222 polypeptide=Potri.001G043300.4.p locus=Potri.001G043300 ID=Potri.001G043300.4.v4.1 annot-version=v4.1 MGSEATSNGSANSGGFKSRVQRYLYSGDTKHVMAGMAVITLVFGVPWFLMNRGTKHASHQDYMEKADKARLDRLSSGSAAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16000			unknown protein		Potri.001G043300 [exp]	0	1
AT1G75580			SAUR-like auxin-responsive pro...		Potri.002G024300 [exp]	1.00	0.7089
AT5G35620		eIFiso4E, EIF(I...	LOSS OF SUSCEPTIBILITY TO POTY...		Potri.008G171100 [exp]	4.00	0.6924	Pt-EIF(ISO)4E.2
AT4G27750		ISI1	IMPAIRED SUCROSE INDUCTION 1, ...		Potri.015G029300 [exp]	6.24	0.6174
AT2G35605			SWIB/MDM2 domain superfamily p...		Potri.005G078400 [exp]	18.30	0.6859
AT3G07590			Small nuclear ribonucleoprotei...		Potri.002G054800 [exp]	18.33	0.6962
AT1G49410		TOM6	translocase of the outer mitoc...		Potri.009G110100 [exp]	20.09	0.7040
AT1G56450		PBG1	20S proteasome beta subunit G1...		Potri.018G037700 [exp]	35.58	0.6616	Pt-PBG1.1
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Potri.011G109500 [exp]	37.22	0.5990
AT1G06010			unknown protein		Potri.012G134200 [exp]	40.59	0.6088
AT1G09920			TRAF-type zinc finger-related ...		Potri.002G109800 [exp]	40.98	0.6092

Compare expression of checked genes

Potri.001G043300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.