Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80870 721 / 0 Protein kinase superfamily protein (.1) AT4G25390 244 / 3e-71 Protein kinase superfamily protein (.1.2) AT2G45590 174 / 6e-46 Protein kinase superfamily protein (.1) AT3G58690 165 / 1e-44 Protein kinase superfamily protein (.1) AT3G24550 161 / 1e-41 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G24540 158 / 2e-41 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G56145 159 / 3e-40 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29720 158 / 7e-40 Leucine-rich repeat transmembrane protein kinase (.1) AT3G26940 152 / 1e-39 CDG1 CONSTITUTIVE DIFFERENTIAL GROWTH 1, Protein kinase superfamily protein (.1) AT1G29750 157 / 2e-39 RKF1 receptor-like kinase in flowers 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G183100 [exp] 1193 / 0 AT1G80870 786 / 0.0 Protein kinase superfamily protein (.1) Potri.002G150800 [exp] 299 / 2e-91 AT2G45590 563 / 0.0 Protein kinase superfamily protein (.1) Potri.014G072900 [exp] 173 / 9e-46 AT2G45590 576 / 0.0 Protein kinase superfamily protein (.1) Potri.014G143100 [exp] 168 / 1e-45 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.013G025700 [exp] 163 / 1e-43 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.018G081300 [exp] 167 / 2e-43 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.015G134100 [exp] 166 / 4e-43 AT4G25390 536 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G053301 [exp] 159 / 2e-41 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.005G036600 [exp] 157 / 2e-41 AT1G54820 434 / 4e-150 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026069 [exp] 661 / 0 AT1G80870 646 / 0.0 Protein kinase superfamily protein (.1) Lus10014361 [exp] 565 / 0 AT1G80870 580 / 0.0 Protein kinase superfamily protein (.1) Lus10041395 [exp] 176 / 1e-46 AT2G45590 647 / 0.0 Protein kinase superfamily protein (.1) Lus10031679 [exp] 164 / 3e-45 AT4G25390 280 / 1e-91 Protein kinase superfamily protein (.1.2) Lus10027393 [exp] 166 / 4e-43 AT4G25390 555 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036533 [exp] 163 / 9e-43 AT2G45590 416 / 2e-138 Protein kinase superfamily protein (.1) Lus10019844 [exp] 161 / 2e-41 AT3G19300 771 / 0.0 Protein kinase superfamily protein (.1) Lus10021003 [exp] 158 / 2e-41 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011098 [exp] 159 / 8e-41 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 159 / 1e-40 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G043700.1 pacid=42787878 polypeptide=Potri.001G043700.1.p locus=Potri.001G043700 ID=Potri.001G043700.1.v4.1 annot-version=v4.1 ATGCCTTCAAGACCCTTATCTCCAAGTTTTGACCATCCTAGACCCAGTTTCTTAACCAAAACCAGAATCTTGTTTTTGACACTCACGATCTCAGCCTCTG TGGTCCTAATCTTTGCAATTGTTTACTTTCTTTACCATCTTTGGTGCACACTTTTGAATCGTTCAAGAACCATCCCTTTTGACTCTAGTGCTCCTTTAAG GCTCCAAAGGTTTTCATACAAAGAGCTAAAGATTGCCACTGATGATTTTGATGATGCAAATACTATTGGCAAAGGAGGTACTGCTACTGTCTTTAGAGGC ATTGCAAGAGATGGCAAGTTATATGCTATTAAGAGGCTTGATAATCTTTCCTTGCAATCAGAGAGAGAGTTTCAGAATGAGTTGCAGATTCTTGGTGGTT TAAGATCACCTTTCTTGGTTATTCTTTTGGGGTACTGTGTTGAAAAGAATAAACGCTTACTTGTTTACGAGTATGTGCCAAATAAAAGCTTGCAAGAATT GTTATTTGGGGATGGTCATTTGAGTATTTGCTGGGAGAGAAGGATTAGTATCATTCTTGATGTTGCAAAAGCACTTGAGTTTCTGCACCGTGAATGTGAC CCACCAGTGATTCATGGGGATATTAAACCAAGCAATGTTTTGCTTGATTTTGATTTGAAAGCAAAGATTTCAGATTTTGGGTTATCAAGGATTAAAGGGG AGGGGGATTTTGGAGTGGATTTGTTTAGTCAAGATTTGGGAAAGAGTCAAGAGCTTTGGAAGAGTCAAGAGCTTTCTGGGAATATGACTTCAGAGACACC AGCAAATGGTACCCCTGTGGAGAGTTGTCACGAGGTAGATTTTGCTCTTGCTTTACAAGCTTCTTCTTCGTCAAAAAATAACAGAACATGCTATAATGTA AAAGCTTTGAACTTGAATTCTTTGAATGATAATGCCAATATTGTGAGTGAGAGTGTTGTTAAGGTAAGGAATGGGAAGGGGAAGGAGGTTTCTAGTGTTG ATATTGGATGGGGTGATTGGAATTGTAAATTTGTGCCTTATGATGATGATTTTTGTAGTAACGATCATAGTAAGGAGCTGAATTGCAATAGCTCCTCGGT TGTTGATGATATAGCTAGTACAAAACAATGGGGAAAGGATTGGTGGTGGAGACAGGATGGGAGTGGTGAATTGTGTAGTAAAGATTATGTCATGGAGTGG ATAGGGAGCCAAGATTGCCCCTCAGCAAATCTAGATTGGGATGACGAGAAGAGAAGTACTCCTGGAAGAAAAGAATTGCGTCGTATGGTCCCATTAGATA AATTAGACGATGCAAACGAACCTCCTCGATTAAAAGAATTCAAGTTTGAAAATCATGTTAGTGGATTTGAGAAGAAGGAACATGAAGGCAGGAAAAATTG TCGGAAGAAAAATAGGAAGATGCAAGAGTGGTGGAAAGATGAGCAGCACTTGGATGGGATAAACCAGAAGGGTAGTAAGCTGAAGAATATTGAAACAAAG CGGAAAGGAGGGTTTAGAATACCGCATTTTGATCTTGGTCGCAGGTTTAGATTTCATAGACGACGAGAGAAAATGGGAGAACAGAACCAAAATGATACTG ATCAAAATGGGGAGTTCAGTTTCAGAAGGGGGTGGAAGAAAAAGAATGCGCGATCTACTGGAAGTGATATGTGGAGTGGGGATCTTTTTAGTCGCGAGTT AAGCAGTACAACAAGCATGAGAGGCACGCTATGTTATGTTGCACCAGAATGTGGTGGCTGCGGGTACTTGATGGAGAAGGCTGATATATACAGCTTAGGG GTTTTAATTCTTGTGATTGTCTCCGGTAGAAGGCCATTACATGTTCTTGCTTCCCCCATGAAGCTTGAGAAAGCAAATTTAATAAGTTGGTGCAGGCAGT TAGCTCAAACTGGGAACATCTTAGAACTAGTAGATGAAAGAGTGAAAGATGAATACAACAAGGAGCAGGCAAGCTTGTGTATAAACTTGGCGCTGTCATG CTTGCAGAGGATGCCTGAATTACGGCCAGCTATCGGAGAGATTGTCAAGATTTTGAAGGGGGAGATGGATCTACCGCCTCTACCTTTCGAGTTTTCTTCC TCCCCACCTTCCAAGTTGTGTAGTAGGTCAAGGAGAAAACAAGGATCCAATGCAGAGTAG
AA sequence Show only first row Show all	>Potri.001G043700.1 pacid=42787878 polypeptide=Potri.001G043700.1.p locus=Potri.001G043700 ID=Potri.001G043700.1.v4.1 annot-version=v4.1 MPSRPLSPSFDHPRPSFLTKTRILFLTLTISASVVLIFAIVYFLYHLWCTLLNRSRTIPFDSSAPLRLQRFSYKELKIATDDFDDANTIGKGGTATVFRG IARDGKLYAIKRLDNLSLQSEREFQNELQILGGLRSPFLVILLGYCVEKNKRLLVYEYVPNKSLQELLFGDGHLSICWERRISIILDVAKALEFLHRECD PPVIHGDIKPSNVLLDFDLKAKISDFGLSRIKGEGDFGVDLFSQDLGKSQELWKSQELSGNMTSETPANGTPVESCHEVDFALALQASSSSKNNRTCYNV KALNLNSLNDNANIVSESVVKVRNGKGKEVSSVDIGWGDWNCKFVPYDDDFCSNDHSKELNCNSSSVVDDIASTKQWGKDWWWRQDGSGELCSKDYVMEW IGSQDCPSANLDWDDEKRSTPGRKELRRMVPLDKLDDANEPPRLKEFKFENHVSGFEKKEHEGRKNCRKKNRKMQEWWKDEQHLDGINQKGSKLKNIETK RKGGFRIPHFDLGRRFRFHRRREKMGEQNQNDTDQNGEFSFRRGWKKKNARSTGSDMWSGDLFSRELSSTTSMRGTLCYVAPECGGCGYLMEKADIYSLG VLILVIVSGRRPLHVLASPMKLEKANLISWCRQLAQTGNILELVDERVKDEYNKEQASLCINLALSCLQRMPELRPAIGEIVKILKGEMDLPPLPFEFSS SPPSKLCSRSRRKQGSNAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80870			Protein kinase superfamily pro...		Potri.001G043700 [exp]	0	1
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Potri.012G139600 [exp]	3.60	0.7277
AT3G06880			Transducin/WD40 repeat-like su...		Potri.002G021600 [exp]	6.48	0.7673
AT1G09250	bHLH	bHLH149, AIF4	basic helix-loop-helix (bHLH) ...		Potri.005G012400 [exp]	7.07	0.7323
					Potri.001G444100 [exp]	8.00	0.8058
AT2G35350		PLL1	poltergeist like 1 (.1)		Potri.001G144700 [exp]	10.77	0.7049
AT3G61980			serine protease inhibitor, Kaz...		Potri.014G108700 [exp]	12.84	0.7575
AT4G27190			NB-ARC domain-containing disea...		Potri.001G445150 [exp]	15.09	0.7826
AT4G27190			NB-ARC domain-containing disea...		Potri.001G443700 [exp]	15.23	0.7382
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170000 [exp]	18.97	0.7603
AT1G68670	GARP		myb-like transcription factor ...		Potri.008G117500 [exp]	22.29	0.6799

Compare expression of checked genes

Potri.001G043700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.