Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 384 / 4e-119 disease resistance family protein / LRR family protein (.1) AT4G13920 298 / 2e-87 AtRLP50 receptor like protein 50 (.1) AT3G05650 261 / 2e-74 AtRLP32 receptor like protein 32 (.1) AT3G11010 259 / 1e-73 AtRLP34 receptor like protein 34 (.1) AT1G47890 261 / 2e-73 AtRLP7 receptor like protein 7 (.1) AT1G71400 253 / 1e-71 AtRLP12 receptor like protein 12 (.1) AT3G11080 253 / 3e-71 AtRLP35 receptor like protein 35 (.1) AT3G05660 251 / 7e-71 AtRLP33 receptor like protein 33 (.1) AT2G32680 246 / 4e-69 AtRLP23 receptor like protein 23 (.1) AT2G25470 245 / 2e-68 AtRLP21 receptor like protein 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G024600 [exp] 688 / 0 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 685 / 0 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 654 / 0 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 629 / 0 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 570 / 0 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.015G028600 [exp] 570 / 0 AT2G34930 387 / 1e-119 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 540 / 9e-178 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 538 / 4e-177 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 479 / 5e-153 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016340 [exp] 503 / 4e-163 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 493 / 3e-159 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10039531 [exp] 488 / 7e-158 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10002743 [exp] 486 / 5e-157 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 485 / 2e-156 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 478 / 8e-154 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10016326 [exp] 476 / 2e-153 AT2G34930 456 / 2e-145 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 474 / 7e-153 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 469 / 2e-150 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10002742 [exp] 446 / 1e-141 AT1G58190 399 / 6e-124 receptor like protein 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G043800.1 pacid=42793047 polypeptide=Potri.001G043800.1.p locus=Potri.001G043800 ID=Potri.001G043800.1.v4.1 annot-version=v4.1 ATGTGCATGGAAAGGGAGAAACAAGCACTTCTTAAGTTGAAAGATGACCTCGTGGATGAGAACGATCAGCTTTCTTCATGGGGGACTAGTGATGATTGCT GCAATTGGACAGGAGTTCGGTGCAACAACAGAACCGGTCATGTTTATTCACTTCAGCTTAATCAGCAGTTAGACGATTCCATGCAATTCAAAGGCGATAT AAGCTCTCCCTTGCTTGAGCTGAAACACTTGGCATACTTGGATATGAGTGAGGTTAGAGCAACCTCCATCCCCCAATTCATTGGTTCATTAAAACACTTG ATGCATCTCAATATGTCCTTTTGTGATCTTACCGGAACTATTCCTCATCAGCTAGGGAATCTTACCAGGTTGGTTTTTCTTGATCTCAGCTACAATAATT TTAACAAAGTTGAAAGTCTTAGCTGGCTTTCTCGTCTTCCTGCTTTGAAACATCTTGATTTGAGCACCGCAGACCTGAGTGGAACTACAGATTGGTTTCA AGCAATCAATAGCCTCCCTTCTTTGCACAACTTGTATTTGAGTGGTTGTGGGCTCTCTTCGGTGATTTCTCCACCATTATTTCGTTCCAATTATTCCCCT GCATCACTTGCAGACATTGATCTTTCTCAAAACACCCTTAAATCTTCAATCTTCCCCTGGTTGCTTAACTTCAACAATAGCCTTGTTCATCTCAAACTTT ATGATAATGAATTTCAAGGAAAAATCCCAAAAGCTTTGGGGGCCATGATTAATCTTGAAAGTCTTCTTCTTTCTGGGAATCATTTTGAAGGTGAAATACC AAGAGCCTTGGCGAATCTTGGTAGATTGGAATCATTGGATTTGTCTTGGAATAGTTTGGTAGGAGAGGTGCCTGATATGAAGAATCTTTCTTTCATAACT AGATTATTTCTTTCTGATAATAAATTAAATGGGAGTTGGATCGAAAATATCCGGCTACTTTCTGATCTTGCTTACTTGGACATCTCCTATAATTTCATGA ATGGAACAATCTCAGAGATTAACTTTTTGAACCTGACCGAATTAACTCACTTGGATATTTCTTCAAATGCATTTGTTTTTAACTTGAGCTTAAACTGGAC TCCTCCTTTCCAACTTGATACCTTAATTATGAGCTCTTGCAAGCTGGGGCCTAGTTTTCCTCAATGGCTACGAACGCAGAGAAGAATTTCCGAGCTGGAC ATCTCCAACGCTGGAATTGAAGATGACATTAGCAGTCGGTTTGGGAAACTTCCTTTCAAATTGAATTATTTGAACATCTCTCACAATCAAATCACTGGTG AAGCGCATAAATTACCATCAGTCGTAGGAGATTCTGCTACGGTCGATATGAGTTCCAACTTCTTGCACGGTTCCTTACCACTTCCACTTAATGCAACAAT ATTGAACCTTTCCAAAAACTTGTTTTCAGGAACTATATCCAACCTTTGTTCAATTGCTTGTGAGAGATTATTTTATCTTGACCTTTCTGACAATTGTCTC TCAGGAGAAATACCTGACTGTTGGATGACGTGTAAAGAACTGAACATCCTTAATTTGGCTGGCAATAATTTTTCAGGGAGGATACCTGCCTCTCTTGGCT CTCTAGTTTTTATCCAGACATTAAATTTGAAAAATAACAGTTTTTCTGGAGAGTTGCCTCCGTCACTAGCCAATTGTACGCAATTGGAAATTCTTGACCT CGGGGAGAACAGATTATCTGGCAAAATTCCATCTTGGATTGGAGAAAATCTTTCGAGTTTGGTTGTTCTTCGCCTAAGATCAAATTACCTTGATGGAACC TTACCCTTGGTCCTTTGCCATCTAGCTCATCTTCAAATATTGGATCTCTCCCACAATAATATATCTGATGATATACCGCATTGCTTCAGCAATTTCTCTG CCATGTCAAAGAATGGGAGCACTTACGAATTCATTGGTCATTCCAACAACCATACTTTACCTTTTTTTATTATTTTATATCATGATAGTGTTAGAGTTGT ATTGAAAGGAATGGAGCTTGAATATGGAAAAACTCTCGAACAAGTGAAGATCATGGATCTTTCCAGCAATAACTTAAGTGGAGAAATTCCTGATGGGATA GCGAAACTTGAGGGCTTGGTTTCGCTACATTTATCAAATAATCGATTGACCGGGATCATTCCTCCCAGGATAGGCCTCATGAGATCATTAGAATCTCTTG ATTTGTCTACAAATCAACTTTCTGGTGGACTTCCTAACGGCCTTCGCGATTTGAATTTTCTCAGTAGCCTGAATGTCTCGTATAACAACTTGTCAGGAAA AATTCCATTAAGCACTCAACTCCAGACCTTTGACAATAATTCATTCGTGGCAAATGCAGAACTTTGTGGGAAACCTCTTTCAAACGAGTGTGCAGCAGAA CAAGCTCATGATCCATCAATCAGTCAAGGCAGCAAAAATGTTGATATCCAAGATGAGGATGGATTTATAAGCAGAAGATTCTATCTGAGCATGGGGATTG GATTTGCCACTGGATTTTGGGCAGTTTGTGGCACTTTATTGCTCTACAGGCCATGGAGGCATGCCTTCTTCCGTCTCATGAACCATATTGAAGATTGGCT GCACGTGACGACAGTGCTAATCATGGCTAGATTGCAAAGGAGGCTTCGTAACTAG
AA sequence Show only first row Show all	>Potri.001G043800.1 pacid=42793047 polypeptide=Potri.001G043800.1.p locus=Potri.001G043800 ID=Potri.001G043800.1.v4.1 annot-version=v4.1 MCMEREKQALLKLKDDLVDENDQLSSWGTSDDCCNWTGVRCNNRTGHVYSLQLNQQLDDSMQFKGDISSPLLELKHLAYLDMSEVRATSIPQFIGSLKHL MHLNMSFCDLTGTIPHQLGNLTRLVFLDLSYNNFNKVESLSWLSRLPALKHLDLSTADLSGTTDWFQAINSLPSLHNLYLSGCGLSSVISPPLFRSNYSP ASLADIDLSQNTLKSSIFPWLLNFNNSLVHLKLYDNEFQGKIPKALGAMINLESLLLSGNHFEGEIPRALANLGRLESLDLSWNSLVGEVPDMKNLSFIT RLFLSDNKLNGSWIENIRLLSDLAYLDISYNFMNGTISEINFLNLTELTHLDISSNAFVFNLSLNWTPPFQLDTLIMSSCKLGPSFPQWLRTQRRISELD ISNAGIEDDISSRFGKLPFKLNYLNISHNQITGEAHKLPSVVGDSATVDMSSNFLHGSLPLPLNATILNLSKNLFSGTISNLCSIACERLFYLDLSDNCL SGEIPDCWMTCKELNILNLAGNNFSGRIPASLGSLVFIQTLNLKNNSFSGELPPSLANCTQLEILDLGENRLSGKIPSWIGENLSSLVVLRLRSNYLDGT LPLVLCHLAHLQILDLSHNNISDDIPHCFSNFSAMSKNGSTYEFIGHSNNHTLPFFIILYHDSVRVVLKGMELEYGKTLEQVKIMDLSSNNLSGEIPDGI AKLEGLVSLHLSNNRLTGIIPPRIGLMRSLESLDLSTNQLSGGLPNGLRDLNFLSSLNVSYNNLSGKIPLSTQLQTFDNNSFVANAELCGKPLSNECAAE QAHDPSISQGSKNVDIQDEDGFISRRFYLSMGIGFATGFWAVCGTLLLYRPWRHAFFRLMNHIEDWLHVTTVLIMARLQRRLRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34930			disease resistance family prot...		Potri.001G043800 [exp]	0	1
AT5G46470		RPS6	RESISTANT TO P. SYRINGAE 6, di...		Potri.019G097640 [exp]	4.12	0.8811
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Potri.016G076000 [exp]	5.47	0.8560
AT5G17680			disease resistance protein (TI...		Potri.019G098700 [exp]	7.07	0.8733
AT4G12731			unknown protein		Potri.009G022366 [exp]	8.48	0.8213
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.015G122000 [exp]	11.40	0.8318
AT1G63860			Disease resistance protein (TI...		Potri.019G097720 [exp]	15.87	0.8369
AT2G45280		ATRAD51C	RAS associated with diabetes p...		Potri.014G068100 [exp]	16.73	0.7112	Pt-RAD51.1
AT5G17680			disease resistance protein (TI...		Potri.019G097800 [exp]	20.85	0.8116
AT5G17680			disease resistance protein (TI...		Potri.019G098900 [exp]	21.02	0.8155
					Potri.010G142250 [exp]	22.97	0.7676

Compare expression of checked genes

Potri.001G043800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.