Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73060 530 / 0 LPA3 Low PSII Accumulation 3 (.1) AT5G48790 54 / 8e-08 Domain of unknown function (DUF1995) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G182801 [exp] 78 / 4e-18 AT1G73060 70 / 4e-16 Low PSII Accumulation 3 (.1) Potri.003G100300 [exp] 53 / 1e-07 AT5G48790 431 / 4e-153 Domain of unknown function (DUF1995) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002315 [exp] 546 / 0 AT1G73060 499 / 4e-177 Low PSII Accumulation 3 (.1) Lus10026089 [exp] 528 / 0 AT1G73060 472 / 1e-167 Low PSII Accumulation 3 (.1) Lus10007599 [exp] 55 / 7e-08 AT5G48790 413 / 3e-141 Domain of unknown function (DUF1995) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09353 [poplar] [flax] DUF1995 Domain of unknown function (DUF1995)
Representative CDS sequence Show only first row Show all	>Potri.001G044000.1 pacid=42788718 polypeptide=Potri.001G044000.1.p locus=Potri.001G044000 ID=Potri.001G044000.1.v4.1 annot-version=v4.1 ATGGCCATGGCCATGCCACTAATGACCTTCTCACTCTCTTCCCTCTCTTCTCTCCCTCGTTCCTCTATTTCAGTCGTCCACTCCACTCCACTCCGCTCTC CCTCTCCAACTCTCTCTAAACTCTCTTACACCACGAAAATCCAATGCGCCAACACCAACAAACAACAAAAGTCACAAACAACTCAAAGTCATGACCCCAA GAGTGGAGTTGCAGTTTACAAGCCCAAGTCTTATGAAGTTCTTGTCACTGATGCTGCCAATTCTCTTGCCTTTTCTCTTCAAGATGGAAAAATCCGCCTG GAAATCGATTTCCCGCCCTTGCCTAGCAACATCTCTTCTTACAAGGGATCTTCAGATGAGTTCATTGATGCCAACATTCAACTTGCCTTGGCTGTTATAA GGAAGCTGCAAGAGAAAAGAGAAACCAGAGCTTGCGTTGTTTTTCCTGATAAGCCAGAAATGCTAAGGGCTTGTCGGATTTTCAAGACAGCTCTTGACTC GATTGATGGTATAACCATAGGTTCCCTTGATGATATTCCGAGTGGTCCTGTCACCACATTTTTCAAGTCTGTGAGGAACACCTTGGATTTTGATTTTGAA GATGACAGTGAAGGTCGTTGGCAGTCCAATGAGCCACCATCACTCTATGTATTTATTAACTGCAGTACACGTGAACTTTCTGTTATAGAGAAGTATGTGG AAAAGTTTGCAACGTCAACCCCAACACTTCTATTCAATCTTGAACTTGACACATTGCGTGCTGACTTGGGTCTTCTGGGATTTCCAACCAAAGACTTGCA CTATCGATTTCTTTCTCAATTCATTCCAGTGTTTTATATTCGAATCAGAGAGTACTCAAAGACAATAGGAGTGGCACCTTATATCGTAAATTACAGTGGA GCATTATTTCGCCAATACCCTGGGCCTTGGCAGGTGATGCTTAAACAAGCAGATGGTTCTTATGCTTGTGTAGCAGAGAGTGCAACGCGCTTCACACTTG GTGAGACAAAAGAAGAATTGTTGAGGGTCCTTGGACTGCAGGAAGAACAAGGAACCTCACTAGAATTTCTTCGCAGAGGCTACAAGTCTGCCACTTGGTG GGAAGAAGATGTTGAACTTGAAACATCTTCTGATTGGCGTAGTTGA
AA sequence Show only first row Show all	>Potri.001G044000.1 pacid=42788718 polypeptide=Potri.001G044000.1.p locus=Potri.001G044000 ID=Potri.001G044000.1.v4.1 annot-version=v4.1 MAMAMPLMTFSLSSLSSLPRSSISVVHSTPLRSPSPTLSKLSYTTKIQCANTNKQQKSQTTQSHDPKSGVAVYKPKSYEVLVTDAANSLAFSLQDGKIRL EIDFPPLPSNISSYKGSSDEFIDANIQLALAVIRKLQEKRETRACVVFPDKPEMLRACRIFKTALDSIDGITIGSLDDIPSGPVTTFFKSVRNTLDFDFE DDSEGRWQSNEPPSLYVFINCSTRELSVIEKYVEKFATSTPTLLFNLELDTLRADLGLLGFPTKDLHYRFLSQFIPVFYIRIREYSKTIGVAPYIVNYSG ALFRQYPGPWQVMLKQADGSYACVAESATRFTLGETKEELLRVLGLQEEQGTSLEFLRRGYKSATWWEEDVELETSSDWRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Potri.001G044000 [exp]	0	1
AT4G12830			alpha/beta-Hydrolases superfam...		Potri.014G175700 [exp]	1.00	0.9905
AT1G76570			Chlorophyll A-B binding family...		Potri.005G258600 [exp]	2.82	0.9755
AT1G78915			Tetratricopeptide repeat (TPR)...		Potri.008G003800 [exp]	3.16	0.9750
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Potri.018G076600 [exp]	3.46	0.9761	Pt-HCF101.1
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Potri.002G000200 [exp]	4.00	0.9744
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Potri.010G027800 [exp]	4.24	0.9749
AT5G12130		ATTERC, PDE149	PIGMENT DEFECTIVE 149, TELLURI...		Potri.006G133900 [exp]	4.35	0.9678
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Potri.016G002300 [exp]	4.58	0.9746
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Potri.015G010600 [exp]	4.58	0.9757	Pt-PPH1.1
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G040800 [exp]	7.74	0.9730

Compare expression of checked genes

Potri.001G044000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.