Plant FIBer expression Database

Potri.001G044300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G15980 639 / 0 PnsB1, NDH48, NDF1 Photosynthetic NDH subcomplex B 1, NAD\(P\)H DEHYDROGENASE SUBUNIT 48, NDH-dependent cyclic electron flow 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002312
[exp]
645 / 0 AT1G15980 638 / 0.0 Photosynthetic NDH subcomplex B 1, NAD\(P\)H DEHYDROGENASE SUBUNIT 48, NDH-dependent cyclic electron flow 1 (.1)
Lus10026086
[exp]
643 / 0 AT1G15980 642 / 0.0 Photosynthetic NDH subcomplex B 1, NAD\(P\)H DEHYDROGENASE SUBUNIT 48, NDH-dependent cyclic electron flow 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0113 GT-B PF01075 Glyco_transf_9 Glycosyltransferase family 9 (heptosyltransferase)
Representative CDS sequence
>Potri.001G044300.1 pacid=42788472 polypeptide=Potri.001G044300.1.p locus=Potri.001G044300 ID=Potri.001G044300.1.v4.1 annot-version=v4.1
ATGGCTTCAACATCTTTGCTGCCCAAAACCATCTCTCCTTTCCTCACTAACCCACCCCCACTTCCCTCGACTCATTTCACCAGCAAGCCGTCGTTTTTTA
ACCCATCAGCAGACCATCATCTTCCATGTACTAGAAAACCAAGCATTCTGACCCCCTATGCAAAGAAAAAGAACCCATGGATTGATATTTTTGATGATGG
AGAGGACCTTGATATGGAATATGGCTCATTGTTTGTAGATGGAAAGCAAGATGAAGATACTAGGCCAGTTGATAACCCCAACAACCCATATGGATTCCTT
AAGTTCCCAAAAGGTTATAATGTAGAGGTTGCTCAGTTGGGATTGAAAATTAGAGGTGATGTAAGGAGGTGCTGTTGTATGATTTCTGGTGGTGTTTATG
AGAACTTGCTCTTCTTTCCTGTCATTCAAATGCTGAAAGACAGGTACCCTGGTATTCTAGTGGATGTGTTGGCATCAGATAGAGGGAAACAGTGTTATGA
GTTGAATAAGAATGTGAGATGGGCAAATGTTTATGATCCTGATGGTGATCCTGAGCCAGCAATTTATACCGACATGATTGGAGTTCTTAAGAATAGGTAC
TATGACTTGGTCTTATCAACGAAATTGGCAGGGCTTGGCCATGCATCATTCATGTTCATGTCGTCGGCTCGGGATAAAGTTAGCTACATATACCCCAATG
TGAATGCAGCAGGAGCAGGGCTACTTCTGACAGAAACATTCACACCAGATAGCGCGAATCTTTCAGAAGGGGGTTACCACATGTACCATCAGATGCTTGA
TTGGCTAGGAAGACCAATTTACAATGTGCCCCGGCAACCAGTGCCTCCTCTAAGAGTTTCACTTTCAAGGAAGCTGAAACAGTACGTAGAGGCAAAATAT
AGGGCTGCTGGTGCAGAGAAAGGGAAATATATTGTGATTCATGGGATAGAATCGGATTCAAAGGCTTCAATGCAGTCTAGAGGTGATACTGATAGCTTGC
TACCGCTTGAAGTATGGGATCAAATAGCTGATGCTATAAGTGGATTTAAGCCAGTTTTTGTCATTCCACATGAGAAAGAAAGGGAAAATGTGGAGGAAAT
AATTTATAATGAAGATATCGGTATTCTCTTCATCACTACTCCAGGACAGCTGGCAGCCCTCATCAATGATTCGGCTGGGGTGATTGCAACAAACACAGCG
GCAATCCAACTTGCAAATGCACGAGAGAAACCTAGCATTGCACTGTTTGGTTCTGAAGAGAAGGGTAAAGTATTTGTTCCCAATGCAGAGGAGAAGAAAT
GCATTATTGTCTCATCTAAAACTGGGAAACTAAAAGACATAGATGTAGGAGCTGTGAAACAGGCAATGCAAATTTTTGATATGTCCCTAGCTCTGGTCTA
G
AA sequence
>Potri.001G044300.1 pacid=42788472 polypeptide=Potri.001G044300.1.p locus=Potri.001G044300 ID=Potri.001G044300.1.v4.1 annot-version=v4.1
MASTSLLPKTISPFLTNPPPLPSTHFTSKPSFFNPSADHHLPCTRKPSILTPYAKKKNPWIDIFDDGEDLDMEYGSLFVDGKQDEDTRPVDNPNNPYGFL
KFPKGYNVEVAQLGLKIRGDVRRCCCMISGGVYENLLFFPVIQMLKDRYPGILVDVLASDRGKQCYELNKNVRWANVYDPDGDPEPAIYTDMIGVLKNRY
YDLVLSTKLAGLGHASFMFMSSARDKVSYIYPNVNAAGAGLLLTETFTPDSANLSEGGYHMYHQMLDWLGRPIYNVPRQPVPPLRVSLSRKLKQYVEAKY
RAAGAEKGKYIVIHGIESDSKASMQSRGDTDSLLPLEVWDQIADAISGFKPVFVIPHEKERENVEEIIYNEDIGILFITTPGQLAALINDSAGVIATNTA
AIQLANAREKPSIALFGSEEKGKVFVPNAEEKKCIIVSSKTGKLKDIDVGAVKQAMQIFDMSLALV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G15980 PnsB1, NDH48, N... Photosynthetic NDH subcomplex... Potri.001G044300
[exp]
0 1
AT3G63190 HFP108, AtcpRRF... "ribosome recycling factor, ch... Potri.002G052400
[exp]
1.41 0.9726 Pt-RRF.1
AT1G58440 SQE1, XF1 SQUALENE EPOXIDASE 1, FAD/NAD(... Potri.019G014376
[exp]
4.89 0.9517
AT3G18890 AtTic62 translocon at the inner envelo... Potri.009G111323
[exp]
5.19 0.9602
AT5G20230 SAG14, ATBCB SENESCENCE ASSOCIATED GENE 14,... Potri.006G067200
[exp]
5.65 0.9463
AT2G35410 RNA-binding (RRM/RBD/RNP motif... Potri.001G141300
[exp]
7.41 0.9563
AT1G17650 GR2, GLYR2 glyoxylate reductase 2 (.1) Potri.003G038450
[exp]
7.74 0.9483
AT5G03940 SRP54CP, CPSRP5... SIGNAL RECOGNITION PARTICLE 54... Potri.006G211500
[exp]
10.09 0.9625 Pt-FFC.2
AT1G43670 FINS1, AtcFBP FRUCTOSE INSENSITIVE 1, Arabid... Potri.002G069000
[exp]
10.24 0.9525
AT1G72640 NAD(P)-binding Rossmann-fold s... Potri.003G063800
[exp]
15.16 0.9496
AT3G18890 AtTic62 translocon at the inner envelo... Potri.004G150300
[exp]
16.88 0.9466 Pt-TIC62.1

Potri.001G044300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.